Evidence map›Paper›PMID 34797862›Full record

ArticlePloS one2021

Modelling COVID-19 transmission in a hemodialysis centre using simulation generated contacts matrices.

Mohammadali Tofighi, Ali Asgary, Asad A Merchant, Mohammad Ali Shafiee, Mahdi M Najafabadi, Nazanin Nadri, Mehdi Aarabi, Jane Heffernan, Jianhong Wu

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
2.0field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 24 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Mohammadali TofighiADERSIM (Advanced Disaster, Emergency, and Rapid Response Simulation), York University, Toronto, Ontario, Canada.ORCID 0000-0001-9574-7614
Ali AsgaryADERSIM (Advanced Disaster, Emergency, and Rapid Response Simulation), York University, Toronto, Ontario, Canada.
Asad A MerchantUniversity Health Network (UHN), Toronto, Ontario, Canada.
Mohammad Ali ShafieeUniversity Health Network (UHN), Toronto, Ontario, Canada.
Mahdi M NajafabadiADERSIM (Advanced Disaster, Emergency, and Rapid Response Simulation), York University, Toronto, Ontario, Canada.ORCID 0000-0001-6095-8120
Nazanin NadriADERSIM (Advanced Disaster, Emergency, and Rapid Response Simulation), York University, Toronto, Ontario, Canada.
Mehdi AarabiUniversity Health Network (UHN), Toronto, Ontario, Canada.
Jane HeffernanModelling Infection and Immunity Lab, York University, Toronto, Ontario, Canada.
Jianhong WuLIAM (Laboratory for Industrial and Applied Mathematics), York University, Toronto, Ontario, Canada.
York University · CAUniversity Health Network · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The COVID-19 pandemic has been particularly threatening to patients with end-stage kidney disease (ESKD) on intermittent hemodialysis and their care providers. Hemodialysis patients who receive life-sustaining medical therapy in healthcare settings, face unique challenges as they need to be at a dialysis unit three or more times a week, where they are confined to specific settings and tended to by dialysis nurses and staff with physical interaction and in close proximity. Despite the importance and critical situation of the dialysis units, modelling studies of the SARS-CoV-2 spread in these settings are very limited. In this paper, we have used a combination of discrete event and agent-based simulation models, to study the operations of a typical large dialysis unit and generate contact matrices to examine outbreak scenarios. We present the details of the contact matrix generation process and demonstrate how the simulation calculates a micro-scale contact matrix comprising the number and duration of contacts at a micro-scale time step. We have used the contacts matrix in an agent-based model to predict disease transmission under different scenarios. The results show that micro-simulation can be used to estimate contact matrices, which can be used effectively for disease modelling in dialysis and similar settings.

Indexed as

Computer SimulationContact TracingCOVID-19Disease Transmission, InfectiousHemodialysis Units, HospitalHumansModels, Statistical

Identifiers

PMID34797862
PMCPMC8604317
OpenAlexW3211873923

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.