Evidence map›Paper›PMID 34796338›Full record

ArticleNature aging2021

Enhanced epigenetic profiling of classical human monocytes reveals a specific signature of healthy aging in the DNA methylome.

Irina Shchukina, Juhi Bagaitkar, Oleg Shpynov, Ekaterina Loginicheva, Sofia Porter, Denis A Mogilenko, Erica Wolin, Patrick Collins, German Demidov, Mykyta Artomov and 18 more

Open access · greenAbstract read
In one paragraph

Article in Nature aging, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
2.6field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 53 citations in OpenAlex.

  1. Review
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  3. Antiviral CD4Communications medicine · 2026
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  16. Adenosine Deaminase-Like Gene-Carried Lentivirus Toolkit for Identification of DNA NAdvanced science (Weinheim, Baden-Wurttemberg, Germany) · 2024
    Article
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  18. Review
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

28 authors at 6 institutions in 5 countries.

Irina ShchukinaDepartment of Pathology and Immunology, Washington University School of Medicine, Saint Louis, MO, USA.
Juhi BagaitkarDepartment of Oral Immunology and Infectious Diseases, University of Louisville, Louisville, KY, USA.
Oleg ShpynovDepartment of Pathology and Immunology, Washington University School of Medicine, Saint Louis, MO, USA.
Ekaterina LoginichevaDepartment of Pathology and Immunology, Washington University School of Medicine, Saint Louis, MO, USA.
Sofia PorterDepartment of Pathology and Immunology, Washington University School of Medicine, Saint Louis, MO, USA.
Denis A MogilenkoDepartment of Pathology and Immunology, Washington University School of Medicine, Saint Louis, MO, USA.
Erica WolinDepartment of Biological Sciences, Columbia University, New York, NY, USA.
Patrick CollinsDepartment of Pathology and Immunology, Washington University School of Medicine, Saint Louis, MO, USA.
German DemidovDepartment of Pathology and Immunology, Washington University School of Medicine, Saint Louis, MO, USA.
Mykyta ArtomovAnalytic and Translational Genetics Unit, Massachusetts General Hospital, Boston, MA, USA.
Konstantin ZaitsevDepartment of Pathology and Immunology, Washington University School of Medicine, Saint Louis, MO, USA.
Sviatoslav SidorovYale Center for Research on Aging, Yale School of Medicine, New Haven, CT, USA.
Christina CamellYale Center for Research on Aging, Yale School of Medicine, New Haven, CT, USA.
Monika BambouskovaDepartment of Pathology and Immunology, Washington University School of Medicine, Saint Louis, MO, USA.
Laura ArthurDepartment of Pathology and Immunology, Washington University School of Medicine, Saint Louis, MO, USA.
Amanda SwainDepartment of Pathology and Immunology, Washington University School of Medicine, Saint Louis, MO, USA.
Alexandra PanteleevaDepartment of Pathology and Immunology, Washington University School of Medicine, Saint Louis, MO, USA.
Aleksei DievskiiJetBrains Research, St. Petersburg, Russia.
Evgeny KurbatskyJetBrains Research, St. Petersburg, Russia.
Petr TsurinovDepartment of Pathology and Immunology, Washington University School of Medicine, Saint Louis, MO, USA.
Roman ChernyatchikDepartment of Pathology and Immunology, Washington University School of Medicine, Saint Louis, MO, USA.
Vishwa Deep DixitYale Center for Research on Aging, Yale School of Medicine, New Haven, CT, USA.
Marko JovanovicDepartment of Biological Sciences, Columbia University, New York, NY, USA.
Sheila A StewartDepartment of Cell Biology and Physiology, Washington University School of Medicine, Saint Louis, MO, USA.
Mark J DalyAnalytic and Translational Genetics Unit, Massachusetts General Hospital, Boston, MA, USA.
Sergey DmitrievJetBrains Research, St. Petersburg, Russia.
Eugene M OltzDepartment of Pathology and Immunology, Washington University School of Medicine, Saint Louis, MO, USA.
Maxim N ArtyomovDepartment of Pathology and Immunology, Washington University School of Medicine, Saint Louis, MO, USA.
Washington University in St. Louis · USBroad Institute · USColumbia University · USITMO University · RUUniversitat Pompeu Fabra · ESUniversity of Louisville · US

Funding

Washington University Center for Cellular ImagingP30CA091842 · NCI · WASHINGTON UNIVERSITY · PI AIMEE S JAMES · 2001 to 2026
$128.0M
WU INSTITUTE OF CLINICAL AND TRANSLATIONAL SCIENCESUL1TR002345 · NCATS · WASHINGTON UNIVERSITY · PI William G. Powderly · 2017 to 2026
$97.8M
Washington University Institute of Clinical and Translational SciencesUL1TR000448 · NCATS · WASHINGTON UNIVERSITY · PI EVANOFF, BRADLEY A · 2012 to 2016
$41.4M
The role of AgRP/Auga-ALK pathway in FGF21's brain action on agingP01AG051459 · NIA · YALE UNIVERSITY · PI VISHWA DEEP DIXIT · 2016 to 2026
$25.7M
Understanding the Host-Microbiome-Therapeutic Triad: Implications for Designing Alternative IntravaginalP20GM125504 · NIGMS · UNIVERSITY OF LOUISVILLE · PI Shirin Ghods · 2018 to 2026
$24.4M
Regulation of Protein Production Dynamics:RNA Binding Proteins and the Ribosome CodeR35GM128802 · NIGMS · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI JOVANOVIC, MARKO · 2018 to 2022
$2.3M
Redox Regulation of Gingival InflammationR01DE028296 · NIDCR · UNIVERSITY OF LOUISVILLE · PI BAGAITKAR, JUHI · 2020 to 2024
$2.3M
Thymic adipogenesis and age-related thymic demiseR01AI105097 · NIAID · YALE UNIVERSITY · PI DIXIT, VISHWA DEEP · 2015 to 2018
$1.9M
Impact of Ketone Metabolites on Inflammasome Deactivation in GoutR01AR070811 · NIAMS · YALE UNIVERSITY · PI DIXIT, VISHWA DEEP · 2017 to 2021
$1.8M
Thymic adipogenesis and age-related thymic demiseR56AI105097 · NIAID · YALE UNIVERSITY · PI DIXIT, VISHWA DEEP · 2013 to 2013
$348k
NCATS NIH HHS UL1 TR000448NCATS NIH HHS UL1 TR002345NCI NIH HHS P30 CA091842NIAID NIH HHS R01 AI105097NIAID NIH HHS R56 AI105097NIAMS NIH HHS R01 AR070811NIA NIH HHS P01 AG051459NIDCR NIH HHS R01 DE028296NIGMS NIH HHS P20 GM125504NIGMS NIH HHS R35 GM128802
6 · The paper itself

Abstract

The impact of healthy aging on molecular programming of immune cells is poorly understood. Here, we report comprehensive characterization of healthy aging in human classical monocytes, with a focus on epigenomic, transcriptomic, and proteomic alterations, as well as the corresponding proteomic and metabolomic data for plasma, using healthy cohorts of 20 young and 20 older males (~27 and ~64 years old on average). For each individual, we performed eRRBS-based DNA methylation profiling, which allowed us to identify a set of age-associated differentially methylated regions (DMRs) - a novel, cell-type specific signature of aging in DNA methylome. Hypermethylation events were associated with H3K27me3 in the CpG islands near promoters of lowly-expressed genes, while hypomethylated DMRs were enriched in H3K4me1 marked regions and associated with age-related increase of expression of the corresponding genes, providing a link between DNA methylation and age-associated transcriptional changes in primary human cells.

Indexed as

Epigenesis, GeneticHealthy AgingDNA MethylationEpigenomeHumansMaleMiddle AgedMonocytesProteomics

Identifiers

PMID34796338
PMCPMC8597198
OpenAlexW3110523587

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.