Evidence map›Paper›PMID 34796242›Full record

ArticleOpen forum infectious diseases2021

The Longest Persistence of Viable SARS-CoV-2 With Recurrence of Viremia and Relapsing Symptomatic COVID-19 in an Immunocompromised Patient-A Case Study.

Chiara Sepulcri, Chiara Dentone, Malgorzata Mikulska, Bianca Bruzzone, Alessia Lai, Daniela Fenoglio, Federica Bozzano, Annalisa Bergna, Alessia Parodi, Tiziana Altosole and 12 more

Open access · goldAbstract read
In one paragraph

Article in Open forum infectious diseases, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 68 papers, 4 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
68citing papers in PubMed, 4 pooled it
5.4field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

68 citing papers in PubMed, 4 syntheses or guidelines pooled it, 94 citations in OpenAlex.

  1. Pooled it
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  3. Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Sequence Characteristics of Coronavirus Disease 2019 (COVID-19) Persistence and Reinfection.Clinical infectious diseases : an official publication of the Infectious Diseases Society of America · 2022
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  19. Prolonged viral pneumonia and high mortality in COVID-19 patients on anti-CD20 monoclonal antibody therapy.European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology · 2024
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  20. Review

8 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors at 6 institutions in 2 countries.

Chiara SepulcriInfectious Diseases Unit, Department of Health Sciences (DISSAL), University of Genoa, Genoa, Italy.ORCID https://orcid.org/0000-0003-1761-436X
Chiara DentoneInfectious Diseases Unit, Ospedale Policlinico San Martino, IRCCS for Oncology and Neurosciences, Genoa, Italy.ORCID https://orcid.org/0000-0002-9096-5812
Malgorzata MikulskaInfectious Diseases Unit, Department of Health Sciences (DISSAL), University of Genoa, Genoa, Italy.ORCID https://orcid.org/0000-0002-5535-4602
Bianca BruzzoneHygiene Unit, Ospedale Policlinico San Martino, IRCCS for Oncology and Neurosciences, Genoa, Italy.ORCID https://orcid.org/0000-0002-3456-1899
Alessia LaiDepartment of Biomedical and Clinical Sciences Luigi Sacco, University of Milan, Milan, Italy.ORCID https://orcid.org/0000-0002-3174-5721
Daniela FenoglioCenter of Excellence for Biomedical Research, Cytofluorimetry Unit, University of Genoa, Genoa, Italy.ORCID https://orcid.org/0000-0001-9532-6473
Federica BozzanoInfectious Diseases Unit, Ospedale Policlinico San Martino, IRCCS for Oncology and Neurosciences, Genoa, Italy.ORCID https://orcid.org/0000-0002-6861-1727
Annalisa BergnaDepartment of Biomedical and Clinical Sciences Luigi Sacco, University of Milan, Milan, Italy.ORCID https://orcid.org/0000-0003-1653-1917
Alessia ParodiBiotherapy Unit, Ospedale Policlinico San Martino, IRCCS for Oncology and Neurosciences, Genoa, Italy.ORCID https://orcid.org/0000-0001-8476-8241
Tiziana AltosoleCenter of Excellence for Biomedical Research, Cytofluorimetry Unit, University of Genoa, Genoa, Italy.
Emanuele DelfinoInfectious Diseases Unit, Ospedale Policlinico San Martino, IRCCS for Oncology and Neurosciences, Genoa, Italy.ORCID https://orcid.org/0000-0002-2973-5719
Giulia BartalucciClinic of Hematology, Department of Internal Medicine (DiMI), University of Genoa, Genoa, Italy.
Andrea OrsiHygiene Unit, Ospedale Policlinico San Martino, IRCCS for Oncology and Neurosciences, Genoa, Italy.ORCID https://orcid.org/0000-0002-2433-9610
Antonio Di BiagioInfectious Diseases Unit, Department of Health Sciences (DISSAL), University of Genoa, Genoa, Italy.ORCID https://orcid.org/0000-0003-1436-5089
Gianguglielmo ZehenderHygiene Unit, Department of Biomedical and Clinical Sciences Luigi Sacco, University of Milan, Milan, Italy.ORCID https://orcid.org/0000-0002-1886-2915
Filippo BalleriniHematology Unit, Ospedale Policlinico San Martino, IRCCS for Oncology and Neurosciences, Genoa, Italy.ORCID https://orcid.org/0000-0001-8954-6752
Stefano BonoraInfectious Diseases Unit, Ospedale Amedeo di Savoia, University of Turin, Turin, Italy.ORCID https://orcid.org/0000-0002-7537-3341
Alessandro SetteCenter for Infectious Disease and Vaccine Research, La Jolla Institute for Immunology, La Jolla, California, USA.
Raffaele De PalmaBiotherapy Unit, Ospedale Policlinico San Martino, IRCCS for Oncology and Neurosciences, Genoa, Italy.ORCID https://orcid.org/0000-0001-9070-8878
Guido SilvestriDepartment of Pathology and Laboratory Medicine, Emory University School of Medicine, Atlanta, Georgia, USA.ORCID https://orcid.org/0000-0001-6602-2470
Andrea De MariaInfectious Diseases Unit, Department of Health Sciences (DISSAL), University of Genoa, Genoa, Italy.ORCID https://orcid.org/0000-0001-5782-333X
Matteo BassettiInfectious Diseases Unit, Department of Health Sciences (DISSAL), University of Genoa, Genoa, Italy.ORCID https://orcid.org/0000-0002-0145-9740
Ospedale Policlinico San Martino · ITUniversity of Genoa · ITUniversity of Milan · ITEmory University · USLa Jolla Institute for Immunology · USOspedale Amedeo di Savoia · IT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundImmunocompromised patients show prolonged shedding of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) in nasopharyngeal swabs. We report a case of prolonged persistence of viable SARS-CoV-2 associated with clinical relapses of coronavirus disease 2019 (COVID-19) in a patient with mantle cell lymphoma who underwent treatment with rituximab, bendamustine, cytarabine with consequent lymphopenia and hypogammaglobulinemia.

methodsNasopharyngeal swabs and blood samples were tested for SARS-CoV-2 by real-time polymerase chain reaction (RT-PCR). On 5 positive nasopharyngeal swabs, we performed viral culture and next-generation sequencing. We analyzed the patient's adaptive and innate immunity to characterize T- and NK-cell subsets.

resultsSARS-CoV-2 RT-PCR on nasopharyngeal swabs samples remained positive for 268 days. All 5 performed viral cultures were positive, and genomic analysis confirmed a persistent infection with the same strain. Viremia resulted positive in 3 out of 4 COVID-19 clinical relapses and cleared each time after remdesivir treatment. The T- and NK-cell dynamic was different in aviremic and viremic samples, and no SARS-CoV-2-specific antibodies were detected throughout the disease course.

conclusionsIn our patient, SARS-CoV-2 persisted with proven infectivity for >8 months. Viremia was associated with COVID-19 relapses, and remdesivir treatment was effective in viremia clearance and symptom remission, although it was unable to clear the virus from the upper respiratory airways. During the viremic phase, we observed a low frequency of terminal effector CD8+ T lymphocytes in peripheral blood; these are probably recruited in inflammatory tissue for viral eradication. In addition, we found a high level of NK-cell repertoire perturbation with relevant involvement during SARS-CoV-2 viremia.

Indexed as

hematologicalimmunological responseSARS-CoV-2viral sheddingviremia

Identifiers

PMID34796242
PMCPMC8135455
OpenAlexW3121748893

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.