Evidence map›Paper›PMID 34795369›Full record

ArticleScientific reports2021

Genome-wide identification and expression analysis of sucrose nonfermenting-1-related protein kinase (SnRK) genes in Triticum aestivum in response to abiotic stress.

Shefali Mishra, Pradeep Sharma, Rajender Singh, Ratan Tiwari, Gyanendra Pratap Singh

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
4.2field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 18 citations in OpenAlex.

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  13. Mining the Roles of Wheat (Frontiers in plant science · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Shefali MishraICAR-Indian Institute of Wheat and Barley Research, Karnal, India.
Pradeep SharmaICAR-Indian Institute of Wheat and Barley Research, Karnal, India. Pradeep.Sharma@icar.gov.in.
Rajender SinghICAR-Indian Institute of Wheat and Barley Research, Karnal, India.
Ratan TiwariICAR-Indian Institute of Wheat and Barley Research, Karnal, India.
Gyanendra Pratap SinghICAR-Indian Institute of Wheat and Barley Research, Karnal, India.
Indian Institute of Wheat and Barley Research · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The SnRK gene family is a key regulator that plays an important role in plant stress response by phosphorylating the target protein to regulate subsequent signaling pathways. This study was aimed to perform a genome-wide analysis of the SnRK gene family in wheat and the expression profiling of SnRKs in response to abiotic stresses. An in silico analysis identified 174 SnRK genes, which were then categorized into three subgroups (SnRK1/2/3) on the basis of phylogenetic analyses and domain types. The gene intron-exon structure and protein-motif composition of SnRKs were similar within each subgroup but different amongst the groups. Gene duplication and synteny between the wheat and Arabidopsis genomes was also investigated in order to get insight into the evolutionary aspects of the TaSnRK family genes. The result of cis-acting element analysis showed that there were abundant stress- and hormone-related cis-elements in the promoter regions of 129 SnRK genes. Furthermore, quantitative real-time PCR data revealed that heat, salt and drought treatments enhanced TaSnRK2.11 expression, suggesting that it might be a candidate gene for abiotic stress tolerance. We also identified eight microRNAs targeting 16 TaSnRK genes which are playing important role across abiotic stresses and regulation in different pathways. These findings will aid in the functional characterization of TaSnRK genes for further research.

Indexed as

Gene Expression Regulation, PlantGenome-Wide Association StudyStress, PhysiologicalAmino Acid MotifsArabidopsisArabidopsis ProteinsChromosomes, PlantComputational BiologyGenes, PlantGenome, PlantHumansMicroRNAsMultigene FamilyPhylogenyPlant LeavesPlant ProteinsArabidopsis ProteinsAt3g01090 protein, ArabidopsisMicroRNAsPlant ProteinsProtein Serine-Threonine Kinases

Identifiers

PMID34795369
PMCPMC8602265
OpenAlexW3213243147

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.