Evidence map›Paper›PMID 34795280›Full record

ArticleNature communications2021

Distinct conformations of the HIV-1 V3 loop crown are targetable for broad neutralization.

Nikolas Friedrich, Emanuel Stiegeler, Matthias Glögl, Thomas Lemmin, Simon Hansen, Claus Kadelka, Yufan Wu, Patrick Ernst, Liridona Maliqi, Caio Foulkes and 15 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
1.7field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 18 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

25 authors at 5 institutions in 6 countries.

Nikolas Friedrich *Institute of Medical Virology, University of Zurich (UZH), Zurich, Switzerland.ORCID http://orcid.org/0000-0003-0694-657X
Emanuel Stiegeler *Institute of Medical Virology, University of Zurich (UZH), Zurich, Switzerland.
Matthias Glögl *Institute of Medical Virology, University of Zurich (UZH), Zurich, Switzerland.
Thomas LemminInstitute of Medical Virology, University of Zurich (UZH), Zurich, Switzerland.
Simon HansenDepartment of Biochemistry, University of Zurich (UZH), Zurich, Switzerland.
Claus KadelkaDepartment of Mathematics, Iowa State University, Ames, IA, USA.ORCID http://orcid.org/0000-0002-5712-8529
Yufan WuDepartment of Biochemistry, University of Zurich (UZH), Zurich, Switzerland.
Patrick ErnstDepartment of Biochemistry, University of Zurich (UZH), Zurich, Switzerland.ORCID http://orcid.org/0000-0001-6037-1856
Liridona MaliqiInstitute of Medical Virology, University of Zurich (UZH), Zurich, Switzerland.
Caio FoulkesInstitute of Medical Virology, University of Zurich (UZH), Zurich, Switzerland.
Mylène MorinDepartment of Chemistry, University of Zurich (UZH), Zurich, Switzerland.
Mustafa ErogluInstitute of Medical Virology, University of Zurich (UZH), Zurich, Switzerland.
Thomas LiechtiInstitute of Medical Virology, University of Zurich (UZH), Zurich, Switzerland.
Branislav IvanInstitute of Medical Virology, University of Zurich (UZH), Zurich, Switzerland.
Thomas ReinbergDepartment of Biochemistry, University of Zurich (UZH), Zurich, Switzerland.
Jonas V SchaeferDepartment of Biochemistry, University of Zurich (UZH), Zurich, Switzerland.
Umut KarakusInstitute of Medical Virology, University of Zurich (UZH), Zurich, Switzerland.
Stephan UrsprungInstitute of Medical Virology, University of Zurich (UZH), Zurich, Switzerland.ORCID http://orcid.org/0000-0003-2476-178X
Axel MannInstitute of Medical Virology, University of Zurich (UZH), Zurich, Switzerland.
Peter RusertInstitute of Medical Virology, University of Zurich (UZH), Zurich, Switzerland.
Roger D KouyosInstitute of Medical Virology, University of Zurich (UZH), Zurich, Switzerland.ORCID http://orcid.org/0000-0002-9220-8348
John A RobinsonDepartment of Chemistry, University of Zurich (UZH), Zurich, Switzerland.ORCID http://orcid.org/0000-0001-7857-8556
Huldrych F GünthardInstitute of Medical Virology, University of Zurich (UZH), Zurich, Switzerland.ORCID http://orcid.org/0000-0002-1142-6723
Andreas PlückthunDepartment of Biochemistry, University of Zurich (UZH), Zurich, Switzerland.ORCID http://orcid.org/0000-0003-4191-5306
Alexandra TrkolaInstitute of Medical Virology, University of Zurich (UZH), Zurich, Switzerland. trkola.alexandra@virology.uzh.ch.ORCID http://orcid.org/0000-0003-1013-876X
University of Zurich · CHIowa State University · USNovartis (Switzerland) · CHRoche (Switzerland) · CHRoche (United States) · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The V3 loop of the HIV-1 envelope (Env) protein elicits a vigorous, but largely non-neutralizing antibody response directed to the V3-crown, whereas rare broadly neutralizing antibodies (bnAbs) target the V3-base. Challenging this view, we present V3-crown directed broadly neutralizing Designed Ankyrin Repeat Proteins (bnDs) matching the breadth of V3-base bnAbs. While most bnAbs target prefusion Env, V3-crown bnDs bind open Env conformations triggered by CD4 engagement. BnDs achieve breadth by focusing on highly conserved residues that are accessible in two distinct V3 conformations, one of which resembles CCR5-bound V3. We further show that these V3-crown conformations can, in principle, be attacked by antibodies. Supporting this conclusion, analysis of antibody binding activity in the Swiss 4.5 K HIV-1 cohort (n = 4,281) revealed a co-evolution of V3-crown reactivities and neutralization breadth. Our results indicate a role of V3-crown responses and its conformational preferences in bnAb development to be considered in preventive and therapeutic approaches.

Indexed as

Protein ConformationAntibodies, NeutralizingCell Line, Tumorenv Gene Products, Human Immunodeficiency VirusEpitopesHEK293 CellsHIV-1HIV AntibodiesHumansImmunoglobulin GMolecular Docking SimulationMolecular Dynamics SimulationMutationProtein BindingAntibodies, Neutralizingenv Gene Products, Human Immunodeficiency VirusEpitopesHIV AntibodiesImmunoglobulin G

Identifiers

PMID34795280
PMCPMC8602657
OpenAlexW3211945731

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.