Evidence map›Paper›PMID 34795239›Full record

ArticleNature communications2021

Age-seroprevalence curves for the multi-strain structure of influenza A virus.

Dao Nguyen Vinh, Nguyen Thi Duy Nhat, Erwin de Bruin, Nguyen Ha Thao Vy, Tran Thi Nhu Thao, Huynh Thi Phuong, Pham Hong Anh, Stacy Todd, Tran Minh Quan, Nguyen Thi Le Thanh and 12 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed, 1 pooled it
2.6field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 1 synthesis or guideline pooled it, 23 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors at 11 institutions in 7 countries.

Dao Nguyen VinhOxford University Clinical Research Unit, Wellcome Trust Major Overseas Programme, Ho Chi Minh City, Vietnam.
Nguyen Thi Duy NhatOxford University Clinical Research Unit, Wellcome Trust Major Overseas Programme, Ho Chi Minh City, Vietnam.
Erwin de BruinDepartment of Viroscience, Erasmus Medical Centre, Rotterdam, Netherlands.
Nguyen Ha Thao VyOxford University Clinical Research Unit, Wellcome Trust Major Overseas Programme, Ho Chi Minh City, Vietnam.
Tran Thi Nhu ThaoOxford University Clinical Research Unit, Wellcome Trust Major Overseas Programme, Ho Chi Minh City, Vietnam.
Huynh Thi PhuongOxford University Clinical Research Unit, Wellcome Trust Major Overseas Programme, Ho Chi Minh City, Vietnam.ORCID http://orcid.org/0000-0002-2816-2752
Pham Hong AnhOxford University Clinical Research Unit, Wellcome Trust Major Overseas Programme, Ho Chi Minh City, Vietnam.
Stacy ToddOxford University Clinical Research Unit, Wellcome Trust Major Overseas Programme, Ho Chi Minh City, Vietnam.
Tran Minh QuanOxford University Clinical Research Unit, Wellcome Trust Major Overseas Programme, Ho Chi Minh City, Vietnam.ORCID http://orcid.org/0000-0003-3337-161X
Nguyen Thi Le ThanhOxford University Clinical Research Unit, Wellcome Trust Major Overseas Programme, Ho Chi Minh City, Vietnam.
Nguyen Thi Nam LienHue Provincial Hospital, Hue, Thua Thien Hue Province, Vietnam.
Nguyen Thi Hong HaKhanh Hoa Provincial Hospital, Nha Trang, Vietnam.
Tran Thi Kim HongDak Lak General Hospital, Buon Ma Thuot, Vietnam.
Pham Quang ThaiNational Institute of Hygiene and Epidemiology, Hanoi, Vietnam.ORCID http://orcid.org/0000-0002-3796-6162
Marc ChoisyOxford University Clinical Research Unit, Wellcome Trust Major Overseas Programme, Ho Chi Minh City, Vietnam.
Tran Dang NguyenCenter for Infectious Disease Dynamics, Department of Biology, Pennsylvania State University, University Park, PA, USA.
Cameron P SimmonsInstitute of Vector Borne Disease, Monash University, Melbourne, VIC, Australia.
Guy E ThwaitesOxford University Clinical Research Unit, Wellcome Trust Major Overseas Programme, Ho Chi Minh City, Vietnam.ORCID http://orcid.org/0000-0002-2858-2087
Hannah E ClaphamOxford University Clinical Research Unit, Wellcome Trust Major Overseas Programme, Ho Chi Minh City, Vietnam.ORCID http://orcid.org/0000-0002-2531-161X
Nguyen Van Vinh ChauHospital for Tropical Diseases, Ho Chi Minh City, Vietnam.ORCID http://orcid.org/0000-0003-4668-1019
Marion KoopmansDepartment of Viroscience, Erasmus Medical Centre, Rotterdam, Netherlands.ORCID http://orcid.org/0000-0002-5204-2312
Maciej F BoniOxford University Clinical Research Unit, Wellcome Trust Major Overseas Programme, Ho Chi Minh City, Vietnam. mfb9@psu.edu.ORCID http://orcid.org/0000-0002-0830-9630
Oxford University Clinical Research Unit · VNPennsylvania State University · USErasmus University Rotterdam · NLUniversity of Oxford · GBHospital for Tropical Diseases · VNHue Central Hospital · VNKhanh Hoa General Hospital · VNMonash University · AUNational Institute Of Hygiene And Epidemiology · VNNational University of Singapore · SGUniversity of Liverpool · GB

Funding

Wellcome TrustWellcome Trust 089276/B/09/7Wellcome Trust 097465/B/11/Z
6 · The paper itself

Abstract

The relationship between age and seroprevalence can be used to estimate the annual attack rate of an infectious disease. For pathogens with multiple serologically distinct strains, there is a need to describe composite exposure to an antigenically variable group of pathogens. In this study, we assay 24,402 general-population serum samples, collected in Vietnam between 2009 to 2015, for antibodies to eleven human influenza A strains. We report that a principal components decomposition of antibody titer data gives the first principal component as an appropriate surrogate for seroprevalence; this results in annual attack rate estimates of 25.6% (95% CI: 24.1% - 27.1%) for subtype H3 and 16.0% (95% CI: 14.7% - 17.3%) for subtype H1. The remaining principal components separate the strains by serological similarity and associate birth cohorts with their particular influenza histories. Our work shows that dimensionality reduction can be used on human antibody profiles to construct an age-seroprevalence relationship for antigenically variable pathogens.

Indexed as

AlgorithmsAntibodies, ViralGeographyHemagglutinin Glycoproteins, Influenza VirusHumansImmunoglobulin GInfluenza A virusInfluenza A Virus, H1N1 SubtypeInfluenza A Virus, H3N2 SubtypeInfluenza, HumanModels, TheoreticalSeroepidemiologic StudiesTime FactorsVietnamVirus ReplicationAntibodies, ViralHemagglutinin Glycoproteins, Influenza VirusImmunoglobulin G

Identifiers

PMID34795239
PMCPMC8602397
OpenAlexW3212712485

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.