Evidence map›Paper›PMID 34795215›Full record

ArticleNature communications2021

Genetic fusions favor tumorigenesis through degron loss in oncogenes.

Jing Liu, Collin Tokheim, Jonathan D Lee, Wenjian Gan, Brian J North, X Shirley Liu, Pier Paolo Pandolfi, Wenyi Wei

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in Nature communications, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
3.2field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 38 citations in OpenAlex.

  1. KRAS-mediated CCDC6 degradation drives xCT upregulation and ferroptosis evasion.Apoptosis : an international journal on programmed cell death · 2026
    Article
  2. Article
  3. Review
  4. Review
  5. Review
  6. Degrons: defining the rules of protein degradation.Nature reviews. Molecular cell biology · 2025
    Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Elacestrant plus alpelisib in anTherapeutic advances in medical oncology · 2024
    Article
  16. Article
  17. Review
  18. Article
  19. Review
  20. Frontiers in molecular biosciences · 2023
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 1 country.

Jing Liu *Department of Pathology, Beth Israel Deaconess Medical Center, Harvard Medical School, Boston, MA, 02215, USA.ORCID http://orcid.org/0000-0002-3113-4015
Collin Tokheim *Department of Data Science, Dana-Farber Cancer Institute, Boston, MA, 02215, USA.
Jonathan D Lee *Cancer Research Institute, Beth Israel Deaconess Cancer Center, Department of Medicine and Pathology, Beth Israel Deaconess Medical Center, Harvard Medical School, Boston, MA, 02215, USA.ORCID http://orcid.org/0000-0002-1229-0098
Wenjian GanDepartment of Biochemistry and Molecular Biology, Medical University of South Carolina, Charleston, SC, 29425, USA.ORCID http://orcid.org/0000-0001-7599-5020
Brian J NorthDepartment of Biomedical Sciences, Creighton University, Omaha, NE, 68178, USA.
X Shirley LiuDepartment of Data Science, Dana-Farber Cancer Institute, Boston, MA, 02215, USA. xsliu@ds.dfci.harvard.edu.ORCID http://orcid.org/0000-0003-4736-7339
Pier Paolo PandolfiCancer Research Institute, Beth Israel Deaconess Cancer Center, Department of Medicine and Pathology, Beth Israel Deaconess Medical Center, Harvard Medical School, Boston, MA, 02215, USA. PierPaolo.PandolfiDeRinaldis@renown.org.ORCID http://orcid.org/0000-0002-5352-5295
Wenyi WeiDepartment of Pathology, Beth Israel Deaconess Medical Center, Harvard Medical School, Boston, MA, 02215, USA. wwei2@bidmc.harvard.edu.ORCID http://orcid.org/0000-0003-0512-3811
Beth Israel Deaconess Medical Center · USHarvard University · USCreighton University · USMedical University of South Carolina · US

Funding

The role of SMAD1 and SATB2 in colon patterningP20GM130457 · NIGMS · MEDICAL UNIVERSITY OF SOUTH CAROLINA · PI STEPHEN A DUNCAN · 2020 to 2026
$18.7M
Deciphering the physiological role and interplay between ubiquitination and phosphorylation pathways to guide targeted cancer therapiesR35CA253027 · NCI · BETH ISRAEL DEACONESS MEDICAL CENTER · PI Wenyi Wei · 2020 to 2026
$6.2M
NCI NIH HHS R35 CA253027NIGMS NIH HHS P20 GM130457
6 · The paper itself

Abstract

Chromosomal rearrangements can generate genetic fusions composed of two distinct gene sequences, many of which have been implicated in tumorigenesis and progression. Our study proposes a model whereby oncogenic gene fusions frequently alter the protein stability of the resulting fusion products, via exchanging protein degradation signal (degron) between gene sequences. Computational analyses of The Cancer Genome Atlas (TCGA) identify 2,406 cases of degron exchange events and reveal an enrichment of oncogene stabilization due to loss of degrons from fusion. Furthermore, we identify and experimentally validate that some recurrent fusions, such as BCR-ABL, CCDC6-RET and PML-RARA fusions, perturb protein stability by exchanging internal degrons. Likewise, we also validate that EGFR or RAF1 fusions can be stabilized by losing a computationally-predicted C-terminal degron. Thus, complementary to enhanced oncogene transcription via promoter swapping, our model of degron loss illustrates another general mechanism for recurrent fusion proteins in driving tumorigenesis.

Indexed as

Amino Acid MotifsAnimalsCarcinogenesisCell Line, TumorCells, CulturedComputational BiologyGene Expression Regulation, NeoplasticHCT116 CellsHEK293 CellsHeLa CellsHumansMaleMiceMice, KnockoutMice, NudeModels, GeneticOncogene Proteins, Fusion

Identifiers

PMID34795215
PMCPMC8602260
OpenAlexW3213568827

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.