Evidence map›Paper›PMID 34793939›Full record

ArticleExperimental gerontology2021

Explaining inter-lab variance in C. elegans N2 lifespan: Making a case for standardized reporting to enhance reproducibility.

Nicholas D Urban, Joseph P Cavataio, Yasmeen Berry, Brandon Vang, Anirudh Maddali, Richard J Sukpraphrute, Santiago Schnell, Matthias C Truttmann

Abstract read
In one paragraph

Article in Experimental gerontology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Nicholas D UrbanDepartment of Molecular & Integrative Physiology, University of Michigan, Ann Arbor, MI 48109, USA.
Joseph P CavataioDepartment of Molecular & Integrative Physiology, University of Michigan, Ann Arbor, MI 48109, USA.
Yasmeen BerryUndergraduate Research Opportunity Program, University of Michigan, Ann Arbor, MI 48109, USA.
Brandon VangUndergraduate Research Opportunity Program, University of Michigan, Ann Arbor, MI 48109, USA.
Anirudh MaddaliUndergraduate Research Opportunity Program, University of Michigan, Ann Arbor, MI 48109, USA.
Richard J SukpraphruteUndergraduate Research Opportunity Program, University of Michigan, Ann Arbor, MI 48109, USA.
Santiago SchnellDepartment of Molecular & Integrative Physiology, University of Michigan, Ann Arbor, MI 48109, USA; Department of Biological Sciences and Department of Applied and Computational Mathematics and Statistics, University of Notre Dame, Notre Dame, IN 46556.
Matthias C TruttmannDepartment of Molecular & Integrative Physiology, University of Michigan, Ann Arbor, MI 48109, USA; Geriatrics Center, University of Michigan, Ann Arbor, MI 48109, USA. Electronic address: mtruttma@med.umich.edu.

Funding

Michigan Institute for Clinical and Health Research (MICHR)UL1TR002240 · NCATS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI LUMENG, JULIE C, MASHOUR, GEORGE ALEXANDER · 2017 to 2022
$54.9M
Research Training in BiogerontologyT32AG000114 · NIA · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI SCOTT PLETCHER · 1985 to 2026
$12.4M
Conserved regulation of proteostasis by post-translational protein AMPylationR35GM142561 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI Matthias Christof Truttmann · 2021 to 2026
$2.8M
NCATS NIH HHS UL1 TR002240NIA NIH HHS T32 AG000114NIGMS NIH HHS R35 GM142561
6 · The paper itself

Abstract

The nematode Caenorhabditis elegans is a powerful model organism for studying cell development, apoptosis, neuronal circuits, and aging. The isolate N2 is recognized by the C. elegans community as the reference wild-type strain. Interestingly, the lifespan of presumably isogenic C. elegans N2 worms-even when grown under comparable conditions-varies significantly amongst distinct laboratories. This hinders the inter-laboratory comparability of C. elegans lifespan data and raises questions regarding data interpretation and reproducibility. Here, we hypothesized slight alterations in experimental design and worm handling could explain the observed discrepancies. To test this hypothesis, we collected and assessed data from over 1000 published C. elegans N2 lifespan assays as well as corresponding methodological meta-data. We find that mean N2 lifespans range from approximately 7 days to upwards of 35 days, despite laboratories disclosing seemingly comparable experimental conditions. We further demonstrate that, in addition to temperature, the use of the chemical sterilizer 5-fluoro-2'-deoxyuridine (FUDR) may change N2 lifespan. Additionally, we observed differences in average N2 lifespan from experiments originating from distinct geographic locations, indicating a potential effect of location-specific factors on experimental outcomes. Taken as a whole, our work indicates the sum of many small, rather than a few critical, differences in experimental conditions may account for the observed variance in N2 lifespan. We also find that the absence of standardized experimental methods and the insufficient disclosure of experiment details in the peer-reviewed literature limits the inter-lab comparability of published results. We thus propose the establishment of a succinct reporting standard for C. elegans lifespan experiments to increase the reliability and reproducibility, and thus scientific value, of these studies.

Indexed as

Caenorhabditis elegansCaenorhabditis elegans ProteinsAnimalsLaboratoriesLongevityReproducibility of ResultsCaenorhabditis elegans ProteinsAgingC. elegansLifespanN2ReproducibilityVariation

Identifiers

PMID34793939
PMCPMC8938996

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.