Evidence map›Paper›PMID 34793470›Full record

ArticlePloS one2021

A non-lethal method for studying scorpion venom gland transcriptomes, with a review of potentially suitable taxa to which it can be applied.

Freek J Vonk, Mátyás A Bittenbinder, Harald M I Kerkkamp, Dwin G B Grashof, John P Archer, Sandra Afonso, Michael K Richardson, Jeroen Kool, Arie van der Meijden

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.7field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 7 citations in OpenAlex.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 2 countries.

Freek J VonkNaturalis Biodiversity Center, Leiden, The Netherlands.
Mátyás A BittenbinderNaturalis Biodiversity Center, Leiden, The Netherlands.
Harald M I KerkkampNaturalis Biodiversity Center, Leiden, The Netherlands.
Dwin G B GrashofCIBIO-InBIO, Biopolis, Universidade do Porto, Porto, Portugal.
John P ArcherCIBIO-InBIO, Biopolis, Universidade do Porto, Porto, Portugal.ORCID 0000-0001-6212-0962
Sandra AfonsoCIBIO-InBIO, Biopolis, Universidade do Porto, Porto, Portugal.
Michael K RichardsonAnimal Science and Health Cluster, Institute of Biology Leiden, Leiden University, Leiden, The Netherlands.
Jeroen KoolFaculty of Sciences, Division of BioAnalytical Chemistry, Department of Chemistry and Pharmaceutical Sciences, Amsterdam Institute of Molecular and Life Sciences, Vrije Universiteit Amsterdam, Amsterdam, The Netherlands.ORCID 0000-0002-0011-5612
Arie van der MeijdenCIBIO-InBIO, Biopolis, Universidade do Porto, Porto, Portugal.ORCID 0000-0002-1317-5382
Universidade do Porto · PTLeiden University · NLNaturalis Biodiversity Center · NLVrije Universiteit Amsterdam · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Scorpion venoms are mixtures of proteins, peptides and small molecular compounds with high specificity for ion channels and are therefore considered to be promising candidates in the venoms-to-drugs pipeline. Transcriptomes are important tools for studying the composition and expression of scorpion venom. Unfortunately, studying the venom gland transcriptome traditionally requires sacrificing the animal and therefore is always a single snapshot in time. This paper describes a new way of generating a scorpion venom gland transcriptome without sacrificing the animal, thereby allowing the study of the transcriptome at various time points within a single individual. By comparing these venom-derived transcriptomes to the traditional whole-telson transcriptomes we show that the relative expression levels of the major toxin classes are similar. We further performed a multi-day extraction using our proposed method to show the possibility of doing a multiple time point transcriptome analysis. This allows for the study of patterns of toxin gene activation over time a single individual, and allows assessment of the effects of diet, season and other factors that are known or likely to influence intraindividual venom composition. We discuss the gland characteristics that may allow this method to be successful in scorpions and provide a review of other venomous taxa to which this method may potentially be successfully applied.

Indexed as

Amino Acid SequenceAnimalsGene Expression ProfilingPeptidesSalivary GlandsScorpionsScorpion VenomsTranscriptomePeptidesScorpion Venoms

Identifiers

PMID34793470
PMCPMC8601437
OpenAlexW3212788912

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.