Evidence map›Paper›PMID 34792755›Full record

ArticleHuman cell2022

Global miRNA expression of bone marrow mesenchymal stem/stromal cells derived from Fanconi anemia patients.

Ilgin Cagnan, Mustafa Keles, Ayse Gokce Keskus, Melike Tombaz, Ozge Burcu Sahan, Fatima Aerts-Kaya, Duygu Uckan-Cetinkaya, Ozlen Konu, Aysen Gunel-Ozcan

Abstract read
PubMed Publisher
In one paragraph

Article in Human cell, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.5field-weighted citation impact, top 42% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 8 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 2 countries.

Ilgin Cagnan *Department of Stem Cell Sciences, Graduate School of Health Sciences, Center for Stem Cell Research and Development, Hacettepe University, 06100, Sihhiye, Ankara, Turkey.ORCID http://orcid.org/0000-0003-1255-2788
Mustafa Keles *Department of Stem Cell Sciences, Graduate School of Health Sciences, Center for Stem Cell Research and Development, Hacettepe University, 06100, Sihhiye, Ankara, Turkey.ORCID http://orcid.org/0000-0002-1357-1879
Ayse Gokce Keskus *Interdisciplinary Neuroscience Program, Bilkent University, Ankara, Turkey.ORCID http://orcid.org/0000-0002-3934-8587
Melike Tombaz *Department of Molecular Biology and Genetics, Bilkent University, Ankara, Turkey.ORCID http://orcid.org/0000-0002-0528-6680
Ozge Burcu SahanDepartment of Stem Cell Sciences, Graduate School of Health Sciences, Center for Stem Cell Research and Development, Hacettepe University, 06100, Sihhiye, Ankara, Turkey.ORCID http://orcid.org/0000-0003-4275-7688
Fatima Aerts-KayaDepartment of Stem Cell Sciences, Graduate School of Health Sciences, Center for Stem Cell Research and Development, Hacettepe University, 06100, Sihhiye, Ankara, Turkey.ORCID http://orcid.org/0000-0002-9583-8572
Duygu Uckan-CetinkayaDepartment of Stem Cell Sciences, Graduate School of Health Sciences, Center for Stem Cell Research and Development, Hacettepe University, 06100, Sihhiye, Ankara, Turkey.ORCID http://orcid.org/0000-0003-3593-6493
Ozlen KonuInterdisciplinary Neuroscience Program, Bilkent University, Ankara, Turkey. konu@fen.bilkent.edu.tr.ORCID http://orcid.org/0000-0002-6223-5329
Aysen Gunel-OzcanDepartment of Stem Cell Sciences, Graduate School of Health Sciences, Center for Stem Cell Research and Development, Hacettepe University, 06100, Sihhiye, Ankara, Turkey. aysen.ozcan@hacettepe.edu.tr.ORCID http://orcid.org/0000-0003-3792-0823
Hacettepe University · TRBilkent University · TREastern Mediterranean University · CY

Funding

Türkiye Bilimsel ve Teknolojik Araştirma Kurumu (TR) 110S021 (in conjunction with EU COST Action BM0805 designated as 'HOXTürkiye Bilimsel ve Teknolojik Araştirma Kurumu (TR) Disease')Türkiye Bilimsel ve Teknolojik Araştirma Kurumu (TR) TALE transcription factors in Development
6 · The paper itself

Abstract

Fanconi anemia (FA) is a rare genetic disorder characterized by genomic instability, developmental defects, and bone marrow (BM) failure. Hematopoietic stem cells (HSCs) in BM interact with the mesenchymal stem/stromal cells (MSCs); and this partly sustains the tissue homeostasis. MicroRNAs (miRNAs) can play a critical role during these interactions possibly via paracrine mechanisms. This is the first study addressing the miRNA profile of FA BM-MSCs obtained before and after BM transplantation (preBMT and postBMT, respectively). Non-coding RNA expression profiling and quality control analyses were performed in Donors (n = 13), FA preBMT (n = 11), and FA postBMT (n = 6) BM-MSCs using GeneChip miRNA 2.0 Array. Six Donor-FA preBMT pairs were used to identify a differentially expressed miRNA expression signature containing 50 miRNAs, which exhibited a strong correlation with the signature obtained from unpaired samples. Five miRNAs (hsa-miR-146a-5p, hsa-miR-148b-3p, hsa-miR-187-3p, hsa-miR-196b-5p, and hsa-miR-25-3p) significantly downregulated in both the paired and unpaired analyses were used to generate the BM-MSCs' miRNA-BM mononuclear mRNA networks upon integration of a public dataset (GSE16334; studying Donor versus FA samples). Functionally enriched KEGG pathways included cellular senescence, miRNAs, and pathways in cancer. Here, we showed that hsa-miR-146a-5p and hsa-miR-874-3p were rescued upon BMT (n = 3 triplets). The decrease in miR-146a-5p was also validated using RT-qPCR and emerged as a strong candidate as a modulator of BM mRNAs in FA patients.

Indexed as

Gene ExpressionFanconi AnemiaGenomic InstabilityHematopoietic Stem CellsHumansMesenchymal Stem CellsMicroRNAsParacrine CommunicationRNA, MessengerMicroRNAsRNA, MessengerBone marrowFanconi anemiaMesenchymal stem/stromal cellsmiRNANon-coding RNAs

Identifiers

PMID34792755
OpenAlexW3213840436

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.