ArticleeLife2021
Pan-genome analysis identifies intersecting roles for
Abstract read
In one paragraph
Article in eLife, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.
0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
–field-weighted citation impact
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
29 citing papers in PubMed.
- Exploring the antifungal activity of the wheat microbiome.Biochemical Society transactions · 2026Review
- Engineering rhizobacterial communities for soil and plant health.Microbiology (Reading, England) · 2026Review
- Biosynthetic gene clusters inmSystems · 2026Article
- Can commensals alter pathogen's antibiotic resistance during co-culture?Journal of medical microbiology · 2026Article
- Analysis of the genome of a Pseudomonas monsensis isolate that produces the antifungal dipeptide maculosin.Access microbiology · 2026Article
- Fluorescent Pseudomonas spp. from suppressive and conducive soils share genomic and functional traits relevant to Fusarium graminearum disease suppression.BMC genomics · 2025Article
- Pseudomonas fragi or not? Beyond MALDI-TOF in the frontier of Pseudomonas diversity.Medical microbiology and immunology · 2025Article
- Whole-Genome Sequencing and Biosynthetic Gene Cluster Analysis of Novel Entomopathogenic BacteriaBiology · 2025Article
- Identification of the lydiamycin biosynthetic gene cluster in a plant pathogen guides structural revision and identification of molecular target.Proceedings of the National Academy of Sciences of the United States of America · 2025Article
- Pitfalls of bacterial pan-genome analysis approaches: a case study of Mycobacterium tuberculosis and two less clonal bacterial species.Bioinformatics (Oxford, England) · 2025Article
- Pseudomonas syringae pv. tomato and the fall armyworm modulate the morpho-physiology and the metabolome of potato plants.PloS one · 2025Article
- Pseudomonas chlororaphis ZH2: Evaluation of the Biocontrol Potential of Continuous Cropping Obstacles on the Basis of Genome Analysis, Autotoxic Substance Degradation and In Vitro Antifungal Activity.Current microbiology · 2024Article
- Taxonomy ofmSystems · 2024Article
- New Frontiers in Potato Breeding: Tinkering with Reproductive Genes and Apomixis.Biomolecules · 2024Review
- The genotype of barley cultivars influences multiple aspects of their associated microbiota via differential root exudate secretion.PLoS biology · 2024Article
- Potato Microbiome: Relationship with Environmental Factors and Approaches for Microbiome Modulation.International journal of molecular sciences · 2024Review
- Does regulation hold the key to optimizing lipopeptide production inFrontiers in bioengineering and biotechnology · 2024Review
- Nonribosomal peptides protectChemical science · 2023Article
- Knowledge-guided data mining on the standardized architecture of NRPS: Subtypes, novel motifs, and sequence entanglements.PLoS computational biology · 2023Article
- Charting the Lipopeptidome of Nonpathogenic Pseudomonas.mSystems · 2023Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
19 authors.
Alba Pacheco-Moreno *Department of Molecular Microbiology, John Innes Centre, Norwich, United Kingdom.
Francesca L Stefanato *Department of Molecular Microbiology, John Innes Centre, Norwich, United Kingdom.ORCID 0000-0002-7961-6478
Jonathan J FordDepartment of Molecular Microbiology, John Innes Centre, Norwich, United Kingdom.ORCID 0000-0001-9886-690X
Christine TrippelDepartment of Molecular Microbiology, John Innes Centre, Norwich, United Kingdom.
Simon UszkoreitDepartment of Molecular Microbiology, John Innes Centre, Norwich, United Kingdom.
Laura FerrafiatDepartment of Molecular Microbiology, John Innes Centre, Norwich, United Kingdom.
Lucia GrengaDepartment of Molecular Microbiology, John Innes Centre, Norwich, United Kingdom.ORCID 0000-0001-5560-1717
Ruth DickensDepartment of Molecular Microbiology, John Innes Centre, Norwich, United Kingdom.
Nathan KellyDepartment of Molecular Microbiology, John Innes Centre, Norwich, United Kingdom.
Alexander Dh KingdonDepartment of Molecular Microbiology, John Innes Centre, Norwich, United Kingdom.ORCID 0000-0001-7074-6893
Liana AmbrosettiDepartment of Molecular Microbiology, John Innes Centre, Norwich, United Kingdom.
Sergey A NepogodievDepartment of Biochemistry and Metabolism, John Innes Centre, Norwich, United Kingdom.ORCID 0000-0001-9796-4612
Kim C FindlayDepartment of Cell and Developmental Biology, John Innes Centre, Norwich, United Kingdom.ORCID 0000-0002-1556-0532
Jitender CheemaDepartment of Computational and Systems Biology, John Innes Centre, Norwich, United Kingdom.
Martin TrickDepartment of Computational and Systems Biology, John Innes Centre, Norwich, United Kingdom.
Govind ChandraDepartment of Molecular Microbiology, John Innes Centre, Norwich, United Kingdom.ORCID 0000-0002-7882-6676
Graham TomalinVCS Potatoes, 2 Burnt Cottages, Framlingham, United Kingdom.
Jacob G MaloneDepartment of Molecular Microbiology, John Innes Centre, Norwich, United Kingdom.ORCID 0000-0003-1959-6820
Andrew W TrumanDepartment of Molecular Microbiology, John Innes Centre, Norwich, United Kingdom.ORCID 0000-0001-5453-7485
Funding
Biotechnology and Biological Sciences Research Council BB/J004553/1Biotechnology and Biological Sciences Research Council BB/J004596/1Biotechnology and Biological Sciences Research Council BB/M011216/1Biotechnology and Biological Sciences Research Council BBS/E/J/000PR9790Biotechnology and Biological Sciences Research Council BBS/E/J/000PR9797
Abstract
Agricultural soil harbors a diverse microbiome that can form beneficial relationships with plants, including the inhibition of plant pathogens.
Indexed as
Hydrogen CyanideLipopeptidesPeptides, CyclicPhytophthora infestansPlant DiseasesPseudomonas fluorescensSolanum tuberosumStreptomycesHydrogen CyanideLipopeptidesPeptides, Cyclicbiocontrolgeneticsgenomicsinfectious diseasemicrobiologynatural productsplant diseasepotatoPseudomonaspseudomonas fluorescensStreptomyces scabies
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Read underepoch 390
Registered trials
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.