Evidence map›Paper›PMID 34791836›Full record

Trial reportCancer medicine2022

Identification of a genetic signature enriching for response to ibrutinib in relapsed/refractory follicular lymphoma in the DAWN phase 2 trial.

Sriram Balasubramanian, Brendan Hodkinson, Stephen J Schuster, Nathan H Fowler, Judith Trotman, Georg Hess, Bruce D Cheson, Michael Schaffer, Steven Sun, Sanjay Deshpande and 3 more

Registry-linked trialOpen access · goldAbstract readClinical Trial, Phase IIControlled Clinical TrialMulticenter Study
In one paragraph

Trial report in Cancer medicine, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT01779791 (An Open-Label, Multicenter, Single-Arm, Phase 2 Study of PCI-32765), which is not on this map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.5field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT01779791 phase2completednot on this map

An Open-Label, Multicenter, Single-Arm, Phase 2 Study of PCI-32765 (Ibrutinib) in Subjects With Refractory Follicular Lymphoma

TypeinterventionalSponsorJanssen Research & Development, LLCRan2013 to 2016Enrolled110ConditionsLymphomaArmsPCI-32765 (Ibrutinib)
3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 6 citations in OpenAlex.

  1. Trial
  2. Trial
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 9 institutions in 5 countries.

Sriram BalasubramanianJanssen Research & Development, Spring House, Pennsylvania, USA.ORCID 0000-0003-2018-2094
Brendan HodkinsonJanssen Research & Development, Spring House, Pennsylvania, USA.
Stephen J SchusterLymphoma Program, Abramson Cancer Center of the University of Pennsylvania, Philadelphia, Pennsylvania, USA.
Nathan H FowlerDepartment of Lymphoma/Myeloma, The University of Texas MD Anderson Cancer Center, Houston, Texas, USA.
Judith TrotmanHaematology Department, Concord Hospital, University of Sydney, Sydney, New South Wales, Australia.
Georg HessDepartment of Hematology/Oncology, Johannes Gutenberg-University, Mainz, Germany.
Bruce D ChesonLombardi Comprehensive Cancer Center, Georgetown University Hospital, Washington, District of Columbia, USA.
Michael SchafferJanssen Research & Development, Spring House, Pennsylvania, USA.
Steven SunJanssen Research & Development, Raritan, New Jersey, USA.
Sanjay DeshpandeJanssen Research & Development, Raritan, New Jersey, USA.
Jessica VermeulenJanssen Research & Development, Leiden, The Netherlands.
Gilles SallesHospices Civils de Lyon, Université de Lyon, Pierre-Bénite Cedex, Lyon, France.
Ajay K GopalDivision of Medical Oncology, Department of Medicine, The University of Washington, Seattle, Washington, USA.
Janssen (United States) · USGeorgetown University · USJanssen (Netherlands) · NLJohannes Gutenberg University Mainz · DESeattle Cancer Care Alliance · USThe University of Sydney · AUThe University of Texas MD Anderson Cancer Center · USUniversité Claude Bernard Lyon 1 · FRUniversity of Pennsylvania · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThe single-arm DAWN trial (NCT01779791) of ibrutinib monotherapy in patients with relapsed/refractory follicular lymphoma (FL) showed an overall response rate (ORR) of 20.9% and a median response duration of 19.4 months. This biomarker analysis of the DAWN dataset sought to determine genetic classifiers for prediction of response to ibrutinib treatment.

methodsWhole exome sequencing was performed on baseline tumor samples. Potential germline variants were excluded; a custom set of 1216 cancer-related genes was examined. Responder- versus nonresponder-associated variants were identified using Fisher's exact test. Classifiers with increasing numbers of genes were created using a greedy algorithm that repeatedly selected genes, adding the most nonresponders to the existing "predicted nonresponders" set and were evaluated with 10-fold cross-validation.

resultsExome data were generated from 88 patient samples and 13,554 somatic mutation variants were inferred. Response data were available for 83 patients (17 responders, 66 nonresponders). Each sample showed 100 to >500 mutated genes, with greater variance across nonresponders. The overall variant pattern was consistent with previous FL studies; 75 genes had mutations in >10% of patients, including genes previously reported as associated with FL. Univariate analysis yielded responder-associated genes FANCA, HISTH1B, ANXA6, BTG1, and PARP10, highlighting the importance of functions outside of B-cell receptor signaling, including epigenetic processes, DNA damage repair, cell cycle/proliferation, and cell motility/invasiveness. While nonresponder-associated genes included well-known TP53 and CARD11, genetic classifiers developed using nonresponder-associated genes included ATP6AP1, EP400, ARID1A, SOCS1, and TBL1XR1, suggesting resistance to ibrutinib may be related to broad biological functions connected to epigenetic modification, telomere maintenance, and cancer-associated signaling pathways (mTOR, JAK/STAT, NF-κB).

conclusionThe results from univariate and genetic classifier analyses provide insights into genes associated with response or resistance to ibrutinib in FL and identify a classifier developed using nonresponder-associated genes, which warrants further investigation.

trial registrationNCT01779791.

Indexed as

AdenineAntineoplastic AgentsCARD Signaling Adaptor ProteinsDNA-Binding ProteinsExome SequencingGenetic MarkersGuanylate CyclaseHumansLymphoma, FollicularMutationPiperidinesRecurrenceAdenineAntineoplastic AgentsCARD11 protein, humanCARD Signaling Adaptor ProteinsDNA-Binding ProteinsGenetic MarkersGuanylate CyclaseibrutinibPiperidinesTP53TG1 protein, humanbiomarkersgenetic variantslymphomamutations

Identifiers

PMID34791836
PMCPMC8704158
OpenAlexW3213103202

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.