Evidence map›Paper›PMID 34791764›Full record

ArticleAddiction biology2022

Dual methylation and hydroxymethylation study of alcohol use disorder.

Shaunna L Clark, Robin F Chan, Min Zhao, Lin Y Xie, William E Copeland, Brenda W J H Penninx, Karolina A Aberg, Edwin J C G van den Oord

Open access · greenAbstract read
In one paragraph

Article in Addiction biology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.5field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 24 citations in OpenAlex.

  1. Article
  2. Review
  3. Validation ofInternational journal of molecular sciences · 2025
    Article
  4. Article
  5. Article
  6. Human genetics and epigenetics of alcohol use disorder.The Journal of clinical investigation · 2024
    Review
  7. Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Epigenetics in psychiatry: Beyond DNA methylation.World journal of psychiatry · 2023
    Review
  14. Review
  15. RNA biomarkers for alcohol use disorder.Frontiers in molecular neuroscience · 2022
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 2 countries.

Shaunna L ClarkDepartment of Psychiatry & Behavioral Sciences, Texas A&M University, Bryan, Texas, USA.ORCID 0000-0002-3193-6923
Robin F ChanCenter for Biomarker Research and Precision Medicine, Virginia Commonwealth University, Richmond, Virginia, USA.
Min ZhaoCenter for Biomarker Research and Precision Medicine, Virginia Commonwealth University, Richmond, Virginia, USA.
Lin Y XieCenter for Biomarker Research and Precision Medicine, Virginia Commonwealth University, Richmond, Virginia, USA.
William E CopelandDepartment of Psychiatry, University of Vermont, Burlington, Vermont, USA.
Brenda W J H PenninxDepartment of Psychiatry, Amsterdam UMC, Vrije Universiteit, Amsterdam, The Netherlands.
Karolina A AbergCenter for Biomarker Research and Precision Medicine, Virginia Commonwealth University, Richmond, Virginia, USA.
Edwin J C G van den OordCenter for Biomarker Research and Precision Medicine, Virginia Commonwealth University, Richmond, Virginia, USA.
Virginia Commonwealth University · USAmsterdam University Medical Centers · NLBryan College · USUniversity of Vermont · US

Funding

Yale Clinical and Translational Science Award (U Component)UL1TR001863 · NCATS · YALE UNIVERSITY · PI John H. Krystal, LUCILA OHNO-MACHADO · 2016 to 2026
$102.9M
Research Supplement to Promote Diversity in Health Related ResearchUL1TR002649 · NCATS · VIRGINIA COMMONWEALTH UNIVERSITY · PI MOELLER, FREDERICK GERARD · 2018 to 2022
$19.1M
Brain Tissue Resource Centre for Alcohol ResearchR28AA012725 · NIAAA · UNIVERSITY OF SYDNEY · PI Greg Trevor Sutherland · 2012 to 2026
$7.0M
Developmental methylomics of childhood trauma and its health consequencesR01MH104576 · NIMH · VIRGINIA COMMONWEALTH UNIVERSITY · PI VAN DEN OORD, EDWIN · 2014 to 2018
$3.1M
A longitudinal methylome study to detect biomarkers predicting MDD trajectoriesR01MH099110 · NIMH · VIRGINIA COMMONWEALTH UNIVERSITY · PI VAN DEN OORD, EDWIN · 2013 to 2017
$2.9M
Diagnostic and prognostic methylation biomarkers for alcohol and related health risksR01AA026057 · NIAAA · TEXAS A&M UNIVERSITY HEALTH SCIENCE CTR · PI CLARK, SHAUNNA L · 2017 to 2019
$663k
NCATS NIH HHS UL1 TR001863NCATS NIH HHS UL1 TR002649NIAAA NIH HHS R01 AA026057NIAAA NIH HHS R28 AA012725NIMH NIH HHS R01 MH099110NIMH NIH HHS R01 MH104576
6 · The paper itself

Abstract

Using an integrative, multi-tissue design, we sought to characterize methylation and hydroxymethylation changes in blood and brain associated with alcohol use disorder (AUD). First, we used epigenomic deconvolution to perform cell-type-specific methylome-wide association studies within subpopulations of granulocytes/T-cells/B-cells/monocytes in 1132 blood samples. Blood findings were then examined for overlap with AUD-related associations with methylation and hydroxymethylation in 50 human post-mortem brain samples. Follow-up analyses investigated if overlapping findings mediated AUD-associated transcription changes in the same brain samples. Lastly, we replicated our blood findings in an independent sample of 412 individuals and aimed to replicate published alcohol methylation findings using our results. Cell-type-specific analyses in blood identified methylome-wide significant associations in monocytes and T-cells. The monocyte findings were significantly enriched for AUD-related methylation and hydroxymethylation in brain. Hydroxymethylation in specific sites mediated AUD-associated transcription in the same brain samples. As part of the most comprehensive methylation study of AUD to date, this work involved the first cell-type-specific methylation study of AUD conducted in blood, identifying and replicating a finding in DLGAP1 that may be a blood-based biomarker of AUD. In this first study to consider the role of hydroxymethylation in AUD, we found evidence for a novel mechanism for cognitive deficits associated with AUD. Our results suggest promising new avenues for AUD research.

Indexed as

AlcoholismAlcohol DrinkingBrainDNA MethylationEpigenomeHumansalcohol use disorderhydroxymethylationmethylation

Identifiers

PMID34791764
PMCPMC8891051
OpenAlexW3212447307

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.