Evidence map›Paper›PMID 34791429›Full record

ArticleNucleic acids research2022

NP-MRD: the Natural Products Magnetic Resonance Database.

David S Wishart, Zinat Sayeeda, Zachary Budinski, AnChi Guo, Brian L Lee, Mark Berjanskii, Manoj Rout, Harrison Peters, Raynard Dizon, Robert Mah and 22 more

Abstract read
In one paragraph

Article in Nucleic acids research, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 50 papers.

0numbers the graph read from it
0cells of the map it votes in
50citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

50 citing papers in PubMed.

  1. Review
  2. Article
  3. Anthracaurisin A─Discovery of a CytotoxicJournal of natural products · 2026
    Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. Review
  9. Article
  10. Review
  11. Review
  12. Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

32 authors.

David S WishartDepartment of Biological Sciences, University of Alberta, Edmonton, AB T6G 2E9, Canada.ORCID 0000-0002-3207-2434
Zinat SayeedaDepartment of Computing Science, University of Alberta, Edmonton, AB T6G 2E8, Canada.
Zachary BudinskiDepartment of Biological Sciences, University of Alberta, Edmonton, AB T6G 2E9, Canada.
AnChi GuoDepartment of Biological Sciences, University of Alberta, Edmonton, AB T6G 2E9, Canada.
Brian L LeeDepartment of Biological Sciences, University of Alberta, Edmonton, AB T6G 2E9, Canada.
Mark BerjanskiiDepartment of Biological Sciences, University of Alberta, Edmonton, AB T6G 2E9, Canada.
Manoj RoutDepartment of Biological Sciences, University of Alberta, Edmonton, AB T6G 2E9, Canada.
Harrison PetersDepartment of Biological Sciences, University of Alberta, Edmonton, AB T6G 2E9, Canada.
Raynard DizonDepartment of Biological Sciences, University of Alberta, Edmonton, AB T6G 2E9, Canada.
Robert MahDepartment of Biological Sciences, University of Alberta, Edmonton, AB T6G 2E9, Canada.
Claudia Torres-CalzadaDepartment of Biological Sciences, University of Alberta, Edmonton, AB T6G 2E9, Canada.
Mickel Hiebert-GiesbrechtDepartment of Biological Sciences, University of Alberta, Edmonton, AB T6G 2E9, Canada.
Dorna VarshaviDepartment of Biological Sciences, University of Alberta, Edmonton, AB T6G 2E9, Canada.
Dorsa VarshaviDepartment of Biological Sciences, University of Alberta, Edmonton, AB T6G 2E9, Canada.
Eponine OlerDepartment of Biological Sciences, University of Alberta, Edmonton, AB T6G 2E9, Canada.
Dana AllenDepartment of Biological Sciences, University of Alberta, Edmonton, AB T6G 2E9, Canada.
Xuan CaoDepartment of Biological Sciences, University of Alberta, Edmonton, AB T6G 2E9, Canada.
Vasuk GautamDepartment of Biological Sciences, University of Alberta, Edmonton, AB T6G 2E9, Canada.
Andrew MarasDepartment of Chemistry, Simon Fraser University, Burnaby, BC V5A 1S6, Canada.
Ella F PoyntonDepartment of Chemistry, Simon Fraser University, Burnaby, BC V5A 1S6, Canada.
Pegah TavangarDepartment of Chemistry, Simon Fraser University, Burnaby, BC V5A 1S6, Canada.
Vera YangDepartment of Chemistry, Simon Fraser University, Burnaby, BC V5A 1S6, Canada.
Jeffrey A van SantenDepartment of Chemistry, Simon Fraser University, Burnaby, BC V5A 1S6, Canada.ORCID 0000-0002-5424-804X
Rajarshi GhoshDepartment of Biochemistry, University of Missouri, Columbia, MO 65211, USA.
Saurav SarmaDepartment of Biochemistry, University of Missouri, Columbia, MO 65211, USA.
Eleanor KnutsonBiological Sciences Division, Pacific Northwest National Laboratory, Richland, WA 99352, USA.
Victoria SullivanBiological Sciences Division, Pacific Northwest National Laboratory, Richland, WA 99352, USA.
Amy M JystadBiological Sciences Division, Pacific Northwest National Laboratory, Richland, WA 99352, USA.
Ryan RenslowBiological Sciences Division, Pacific Northwest National Laboratory, Richland, WA 99352, USA.
Lloyd W SumnerDepartment of Biochemistry, University of Missouri, Columbia, MO 65211, USA.
Roger G LiningtonDepartment of Chemistry, Simon Fraser University, Burnaby, BC V5A 1S6, Canada.ORCID 0000-0003-1818-4971
John R CortBiological Sciences Division, Pacific Northwest National Laboratory, Richland, WA 99352, USA.

Funding

NP-MRD: Natural Products Magnetic Resonance DatabaseU24AT010811 · NCCIH · BATTELLE PACIFIC NORTHWEST LABORATORIES · PI CORT, JOHN R · 2020 to 2024
$4.1M
NCCIH NIH HHS U24 AT010811
6 · The paper itself

Abstract

The Natural Products Magnetic Resonance Database (NP-MRD) is a comprehensive, freely available electronic resource for the deposition, distribution, searching and retrieval of nuclear magnetic resonance (NMR) data on natural products, metabolites and other biologically derived chemicals. NMR spectroscopy has long been viewed as the 'gold standard' for the structure determination of novel natural products and novel metabolites. NMR is also widely used in natural product dereplication and the characterization of biofluid mixtures (metabolomics). All of these NMR applications require large collections of high quality, well-annotated, referential NMR spectra of pure compounds. Unfortunately, referential NMR spectral collections for natural products are quite limited. It is because of the critical need for dedicated, open access natural product NMR resources that the NP-MRD was funded by the National Institute of Health (NIH). Since its launch in 2020, the NP-MRD has grown quickly to become the world's largest repository for NMR data on natural products and other biological substances. It currently contains both structural and NMR data for nearly 41,000 natural product compounds from >7400 different living species. All structural, spectroscopic and descriptive data in the NP-MRD is interactively viewable, searchable and fully downloadable in multiple formats. Extensive hyperlinks to other databases of relevance are also provided. The NP-MRD also supports community deposition of NMR assignments and NMR spectra (1D and 2D) of natural products and related meta-data. The deposition system performs extensive data enrichment, automated data format conversion and spectral/assignment evaluation. Details of these database features, how they are implemented and plans for future upgrades are also provided. The NP-MRD is available at https://np-mrd.org.

Indexed as

Databases, FactualMagnetic Resonance SpectroscopySoftwareBiological ProductsInternetBiological Products

Identifiers

PMID34791429
PMCPMC8728158

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.