Evidence map›Paper›PMID 34790910›Full record

ArticleFrontiers in bioinformatics2021

CellPAINT: Turnkey Illustration of Molecular Cell Biology.

Adam Gardner, Ludovic Autin, Daniel Fuentes, Martina Maritan, Benjamin A Barad, Michaela Medina, Arthur J Olson, Danielle A Grotjahn, David S Goodsell

Abstract read
In one paragraph

Article in Frontiers in bioinformatics, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed.

  1. The virus lesson: Teaching viral structure and quasi-symmetry in mixed reality.Protein science : a publication of the Protein Society · 2026
    Article
  2. Review
  3. Article
  4. Review
  5. Article
  6. Article
  7. Integrative modeling of the cell.Acta biochimica et biophysica Sinica · 2022
    Review
  8. Design - a new way to look at old molecules.Journal of integrative bioinformatics · 2022
    Article
  9. Integrative illustration of a JCVI-syn3A minimal cell.Journal of integrative bioinformatics · 2022
    Article
  10. Review
  11. Building Structural Models of a Whole Mycoplasma Cell.Journal of molecular biology · 2022
    Article
  12. Article
  13. Visualising Viruses.The Journal of general virology · 2022
    Review
  14. Review
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Adam GardnerDepartment of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, CA, United States.
Ludovic AutinDepartment of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, CA, United States.
Daniel FuentesDepartment of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, CA, United States.
Martina MaritanDepartment of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, CA, United States.
Benjamin A BaradDepartment of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, CA, United States.
Michaela MedinaDepartment of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, CA, United States.
Arthur J OlsonDepartment of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, CA, United States.
Danielle A GrotjahnDepartment of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, CA, United States.
David S GoodsellDepartment of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, CA, United States.

Funding

PDB MANAGEMENT BY THE RESEARCH COLLABORATORY FOR STRUCTURAL BIOINFORMATICSR01GM133198 · NIGMS · RUTGERS, THE STATE UNIV OF N.J. · PI BURLEY, STEPHEN K · 2019 to 2023
$19.3M
X-ray Crystallographic Fragment Screening CoreU54AI150472 · NIAID · SEATTLE CHILDREN'S HOSPITAL · PI OLSON, ARTHUR J. · 2019 to 2021
$15.7M
Modeling and Interacting with the Visible Molecular CellR01GM120604 · NIGMS · SCRIPPS RESEARCH INSTITUTE, THE · PI AUTIN, LUDOVIC · 2016 to 2025
$4.2M
NIAID NIH HHS U54 AI150472NIGMS NIH HHS R01 GM120604NIGMS NIH HHS R01 GM133198
6 · The paper itself

Abstract

CellPAINT is an interactive digital tool that allows non-expert users to create illustrations of the molecular structure of cells and viruses. We present a new release with several key enhancements, including the ability to generate custom ingredients from structure information in the Protein Data Bank, and interaction, grouping, and locking functions that streamline the creation of assemblies and illustration of large, complex scenes. An example of CellPAINT as a tool for hypothesis generation in the interpretation of cryoelectron tomograms is presented. CellPAINT is freely available at http://ccsb.scripps.edu/cellpaint.

Indexed as

biomolecular assemblycellular structurecomputational biologycryo-electron tomographymolecular illustration

Identifiers

PMID34790910
PMCPMC8594902

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.