Evidence map›Paper›PMID 34790898›Full record

ArticleProceedings of machine learning research2020

Zero-Shot Clinical Acronym Expansion via Latent Meaning Cells.

Griffin Adams, Mert Ketenci, Shreyas Bhave, Adler Perotte, Noémie Elhadad

Abstract read
In one paragraph

Article in Proceedings of machine learning research, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

  1. Article
  2. Article
  3. Disambiguation of acronyms in clinical narratives with large language models.Journal of the American Medical Informatics Association : JAMIA · 2024
    Article
  4. Article
  5. Exploring Large Language Models for Acronym, Symbol Sense Disambiguation, and Semantic Similarity and Relatedness Assessment.AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science · 2024
    Article
  6. Clinical Note Structural Knowledge Improves Word Sense Disambiguation.AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science · 2024
    Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. What's in a Summary? Laying the Groundwork for Advances in Hospital-Course Summarization.Proceedings of the conference. Association for Computational Linguistics. North American Chapter. Meeting · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Griffin AdamsColumbia University, New York, NY, US.
Mert KetenciColumbia University, New York, NY, US.
Shreyas BhaveColumbia University, New York, NY, US.
Adler PerotteColumbia University, New York, NY, US.
Noémie ElhadadColumbia University, New York, NY, US.

Funding

Training in Biomedical Informatics at Columbia UniversityT15LM007079 · NLM · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI NOEMIE ELHADAD, GEORGE M HRIPCSAK · 1992 to 2026
$28.9M
Open Health Natural Language Processing CollaboratoryU01TR002062 · NCATS · MAYO CLINIC ROCHESTER · PI JIANG, XIAOQIAN, LIU, HONGFANG · 2017 to 2021
$7.6M
Extended Methods and Software Development for Health NLPR01GM114355 · NIGMS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI BETHARD, STEVEN, SAVOVA, GUERGANA K. · 2016 to 2024
$5.0M
NCATS NIH HHS U01 TR002062NIGMS NIH HHS R01 GM114355NLM NIH HHS T15 LM007079
6 · The paper itself

Abstract

We introduce Latent Meaning Cells, a deep latent variable model which learns contextualized representations of words by combining local lexical context and metadata. Metadata can refer to granular context, such as section type, or to more global context, such as unique document ids. Reliance on metadata for contextualized representation learning is apropos in the clinical domain where text is semi-structured and expresses high variation in topics. We evaluate the LMC model on the task of zero-shot clinical acronym expansion across three datasets. The LMC significantly outperforms a diverse set of baselines at a fraction of the pre-training cost and learns clinically coherent representations. We demonstrate that not only is metadata itself very helpful for the task, but that the LMC inference algorithm provides an additional large benefit.

Indexed as

clinical acronymsrepresentation learningvariational inference

Identifiers

PMID34790898
PMCPMC8594244

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.