Evidence map›Paper›PMID 34789845›Full record

ArticleCommunications biology2021

Transcriptional changes and the role of ONECUT1 in hPSC pancreatic differentiation.

Sandra Heller, Zhijian Li, Qiong Lin, Ryan Geusz, Markus Breunig, Meike Hohwieler, Xi Zhang, Gopika G Nair, Thomas Seufferlein, Matthias Hebrok and 4 more

Open access · goldAbstract read
In one paragraph

Article in Communications biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
6.7field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 35 citations in OpenAlex.

  1. Review
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  8. Neonatal diabetes mellitus around the world: Update 2024.Journal of diabetes investigation · 2024
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  19. Frontiers in genetics · 2023
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 6 institutions in 3 countries.

Sandra HellerDepartment of Internal Medicine I, Ulm University Hospital, Ulm, Germany.ORCID http://orcid.org/0000-0002-8704-2646
Zhijian LiInstitute for Computational Genomics, RWTH Aachen University Medical School, Aachen, Germany.ORCID http://orcid.org/0000-0002-1523-1333
Qiong LinBayer AG, Research & Development, Pharmaceuticals, Bioinformatics, Berlin, Germany.
Ryan GeuszPediatric Diabetes Research Center (PDRC) at the University of California, San Diego, USA.
Markus BreunigDepartment of Internal Medicine I, Ulm University Hospital, Ulm, Germany.ORCID http://orcid.org/0000-0002-2817-1974
Meike HohwielerDepartment of Internal Medicine I, Ulm University Hospital, Ulm, Germany.
Xi ZhangDepartment of Internal Medicine I, Ulm University Hospital, Ulm, Germany.ORCID http://orcid.org/0000-0001-6485-4564
Gopika G NairDiabetes Center at the University of California, San Francisco, USA.
Thomas SeufferleinDepartment of Internal Medicine I, Ulm University Hospital, Ulm, Germany.
Matthias HebrokDiabetes Center at the University of California, San Francisco, USA.ORCID http://orcid.org/0000-0002-3833-8862
Maike SanderPediatric Diabetes Research Center (PDRC) at the University of California, San Diego, USA.
Cécile JulierUniversité de Paris, Institut Cochin, INSERM U1016, CNRS UMR-8104, Paris, France.
Alexander KlegerDepartment of Internal Medicine I, Ulm University Hospital, Ulm, Germany. alexander.kleger@uni-ulm.de.ORCID http://orcid.org/0000-0003-0592-5232
Ivan G CostaInstitute for Computational Genomics, RWTH Aachen University Medical School, Aachen, Germany. ivan.costa@rwth-aachen.de.ORCID http://orcid.org/0000-0003-2890-8697
University Hospital Ulm · DERWTH Aachen University · DEUniversity of California San Diego · USUniversity of California, San Francisco · USBayer (Germany) · DECentre National de la Recherche Scientifique · FR

Funding

Training Program in Basic Clinical GeneticsT32GM008666 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI HAMILTON, BRUCE A · 1998 to 2021
$8.6M
Nkx6 gene function in pancreas developmentR01DK068471 · NIDDK · UNIVERSITY OF COLORADO DENVER · PI WORTHAM, MATTHEW · 2004 to 2024
$6.6M
Functional Analysis of T2D Associated Non-coding SNPsU01DK105541 · NIDDK · LUDWIG INSTITUTE FOR CANCER RES LTD · PI FRAZER, KELLY A, REN, BING · 2015 to 2019
$4.6M
Regulation of beta cell identity and dedifferentiationR01DK105831 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI HEBROK, MATTHIAS · 2015 to 2022
$2.9M
Agence Nationale de la Recherche (French National Research Agency) ANR-18-CE92-0031Deutsche Forschungsgemeinschaft (German Research Foundation) GE 2811/3-1Deutsche Forschungsgemeinschaft (German Research Foundation) KL 2544/1-2Deutsche Forschungsgemeinschaft (German Research Foundation) KL 2544/5-1Deutsche Forschungsgemeinschaft (German Research Foundation) KL 2544/6-1Deutsche Forschungsgemeinschaft (German Research Foundation) KL 2544/7-1NIDDK NIH HHS R01 DK068471NIDDK NIH HHS R01 DK105831NIDDK NIH HHS U01 DK105541NIGMS NIH HHS T32 GM008666U.S. Department of Health & Human Services | National Institutes of Health (NIH) DK068471U.S. Department of Health & Human Services | National Institutes of Health (NIH) DK105541
6 · The paper itself

Abstract

Cell type specification during pancreatic development is tightly controlled by a transcriptional and epigenetic network. The precise role of most transcription factors, however, has been only described in mice. To convey such concepts to human pancreatic development, alternative model systems such as pancreatic in vitro differentiation of human pluripotent stem cells can be employed. Here, we analyzed stage-specific RNA-, ChIP-, and ATAC-sequencing data to dissect transcriptional and regulatory mechanisms during pancreatic development. Transcriptome and open chromatin maps of pancreatic differentiation from human pluripotent stem cells provide a stage-specific pattern of known pancreatic transcription factors and indicate ONECUT1 as a crucial fate regulator in pancreas progenitors. Moreover, our data suggest that ONECUT1 is also involved in preparing pancreatic progenitors for later endocrine specification. The dissection of the transcriptional and regulatory circuitry revealed an important role for ONECUT1 within such network and will serve as resource to study human development and disease.

Indexed as

Cell DifferentiationCell LineGene Expression Regulation, DevelopmentalHepatocyte Nuclear Factor 6Human Embryonic Stem CellsHumansPancreasTranscription, GeneticHepatocyte Nuclear Factor 6ONECUT1 protein, human

Identifiers

PMID34789845
PMCPMC8599846
OpenAlexW3212537999

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.