Evidence map›Paper›PMID 34789764›Full record

ArticleNature communications2021

DHX15-independent roles for TFIP11 in U6 snRNA modification, U4/U6.U5 tri-snRNP assembly and pre-mRNA splicing fidelity.

Amandine Duchemin, Tina O'Grady, Sarah Hanache, Agnès Mereau, Marc Thiry, Ludivine Wacheul, Catherine Michaux, Eric Perpète, Eric Hervouet, Paul Peixoto and 5 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
1.3field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 21 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Science advances · 2025
    Article
  5. Article
  6. Mechanisms of RNA alternative splicing dysregulation in triple-negative breast cancer.Zhong nan da xue xue bao. Yi xue ban = Journal of Central South University. Medical sciences · 2024
    Review
  7. Article
  8. Article
  9. Coilin and Cajal bodies.Nucleus (Austin, Tex.) · 2023
    Review
  10. Article
  11. Review
  12. DHX15 is involved in SUGP1-mediated RNA missplicing by mutant SF3B1 in cancer.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  13. Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 5 institutions in 3 countries.

Amandine Duchemin *GIGA-Molecular Biology of Diseases, Gene Expression and Cancer Laboratory, B34 +1, University of Liege, Avenue de l'Hôpital 1, B-4000, Liège, Belgium.ORCID http://orcid.org/0000-0002-2668-4514
Tina O'Grady *GIGA-Molecular Biology of Diseases, Gene Expression and Cancer Laboratory, B34 +1, University of Liege, Avenue de l'Hôpital 1, B-4000, Liège, Belgium.ORCID http://orcid.org/0000-0002-1283-0293
Sarah Hanache *GIGA-Molecular Biology of Diseases, Gene Expression and Cancer Laboratory, B34 +1, University of Liege, Avenue de l'Hôpital 1, B-4000, Liège, Belgium.
Agnès MereauCNRS, Institut de Génétique et Développement de Rennes (IGDR) UMR 6290, Université de Rennes, F-35043, Rennes, France.ORCID http://orcid.org/0000-0002-5603-757X
Marc ThiryGIGA-Neurosciences, Unit of Cell Biology, B36 + 1, University of Liege, Avenue Hippocrate 15, B-4000, Liège, Belgium.
Ludivine WacheulRNA Molecular Biology, Fonds de la Recherche Scientifique (F.R.S./FNRS), Université Libre de Bruxelles (ULB) - Biopark campus Gosselies, B-6041, Gosselies, Belgium.ORCID http://orcid.org/0000-0002-0443-8865
Catherine MichauxNARILIS, ILEE and NISM Institutes, Laboratory of Physical Chemistry of Biomolecules, University of Namur, Rue de Bruxelles 61, B-5000, Namur, Belgium.ORCID http://orcid.org/0000-0001-8208-3310
Eric PerpèteNARILIS, ILEE and NISM Institutes, Laboratory of Physical Chemistry of Biomolecules, University of Namur, Rue de Bruxelles 61, B-5000, Namur, Belgium.
Eric HervouetINSERM UMR 1098 RIGHT, EPIgenetics and GENe EXPression Technical Platform (EPIGENExp), INSERM, EFS-BFC, University Bourgogne Franche-Comté, F-25000, Besançon, France.ORCID http://orcid.org/0000-0002-4841-7812
Paul PeixotoINSERM UMR 1098 RIGHT, EPIgenetics and GENe EXPression Technical Platform (EPIGENExp), INSERM, EFS-BFC, University Bourgogne Franche-Comté, F-25000, Besançon, France.ORCID http://orcid.org/0000-0001-6302-7823
Felix G M ErnstRNA Molecular Biology, Fonds de la Recherche Scientifique (F.R.S./FNRS), Université Libre de Bruxelles (ULB) - Biopark campus Gosselies, B-6041, Gosselies, Belgium.ORCID http://orcid.org/0000-0001-5064-0928
Yann AudicCNRS, Institut de Génétique et Développement de Rennes (IGDR) UMR 6290, Université de Rennes, F-35043, Rennes, France.ORCID http://orcid.org/0000-0003-2498-9792
Franck DequiedtGIGA-Molecular Biology of Diseases, Gene Expression and Cancer Laboratory, B34 +1, University of Liege, Avenue de l'Hôpital 1, B-4000, Liège, Belgium.
Denis L J LafontaineRNA Molecular Biology, Fonds de la Recherche Scientifique (F.R.S./FNRS), Université Libre de Bruxelles (ULB) - Biopark campus Gosselies, B-6041, Gosselies, Belgium.ORCID http://orcid.org/0000-0001-7295-6288
Denis MottetGIGA-Molecular Biology of Diseases, Gene Expression and Cancer Laboratory, B34 +1, University of Liege, Avenue de l'Hôpital 1, B-4000, Liège, Belgium. dmottet@uliege.be.ORCID http://orcid.org/0000-0001-5410-1593
University of Liège · BEUniversité Libre de Bruxelles · BECentre National de la Recherche Scientifique · FRInserm · FRUniversity of Namur · BE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The U6 snRNA, the core catalytic component of the spliceosome, is extensively modified post-transcriptionally, with 2'-O-methylation being most common. However, how U6 2'-O-methylation is regulated remains largely unknown. Here we report that TFIP11, the human homolog of the yeast spliceosome disassembly factor Ntr1, localizes to nucleoli and Cajal Bodies and is essential for the 2'-O-methylation of U6. Mechanistically, we demonstrate that TFIP11 knockdown reduces the association of U6 snRNA with fibrillarin and associated snoRNAs, therefore altering U6 2'-O-methylation. We show U6 snRNA hypomethylation is associated with changes in assembly of the U4/U6.U5 tri-snRNP leading to defects in spliceosome assembly and alterations in splicing fidelity. Strikingly, this function of TFIP11 is independent of the RNA helicase DHX15, its known partner in yeast. In sum, our study demonstrates an unrecognized function for TFIP11 in U6 snRNP modification and U4/U6.U5 tri-snRNP assembly, identifying TFIP11 as a critical spliceosome assembly regulator.

Indexed as

Cell NucleolusCell SurvivalCoiled BodiesHeLa CellsHumansMethylationMitosisNuclear ProteinsNuclear SpecklesProtein BindingProtein StabilityRibonucleoprotein, U4-U6 Small NuclearRibonucleoprotein, U5 Small NuclearRNA PrecursorsRNA, Small NuclearRNA, Small NucleolarNuclear Proteinsp80-coilinRibonucleoprotein, U4-U6 Small NuclearRibonucleoprotein, U5 Small NuclearRNA PrecursorsRNA, Small NuclearRNA, Small NucleolarRNA Splicing FactorsTFIP11 protein, humanU6 small nuclear RNA

Identifiers

PMID34789764
PMCPMC8599867
OpenAlexW3213010392

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.