Evidence map›Paper›PMID 34785977›Full record

ArticleBiodiversity data journal2021

BEXIS2: A FAIR-aligned data management system for biodiversity, ecology and environmental data.

Javad Chamanara, Jitendra Gaikwad, Roman Gerlach, Alsayed Algergawy, Andreas Ostrowski, Birgitta König-Ries

Abstract read
In one paragraph

Article in Biodiversity data journal, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Javad ChamanaraFriedrich-Schiller-Universität Jena, Jena, Germany Friedrich-Schiller-Universität Jena Jena Germany.ORCID https://orcid.org/0000-0002-7565-4389
Jitendra GaikwadFriedrich-Schiller-Universität Jena, Jena, Germany Friedrich-Schiller-Universität Jena Jena Germany.ORCID https://orcid.org/0000-0002-7565-4389
Roman GerlachFriedrich-Schiller-Universität Jena, Jena, Germany Friedrich-Schiller-Universität Jena Jena Germany.
Alsayed AlgergawyFriedrich-Schiller-Universität Jena, Jena, Germany Friedrich-Schiller-Universität Jena Jena Germany.
Andreas OstrowskiFriedrich-Schiller-Universität Jena, Jena, Germany Friedrich-Schiller-Universität Jena Jena Germany.ORCID https://orcid.org/0000-0002-2033-779X
Birgitta König-RiesFriedrich-Schiller-Universität Jena, Jena, Germany Friedrich-Schiller-Universität Jena Jena Germany.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundObtaining fit-to-use data associated with diverse aspects of biodiversity, ecology and environment is challenging since often it is fragmented, sub-optimally managed and available in heterogeneous formats. Recently, with the universal acceptance of the FAIR data principles, the requirements and standards of data publications have changed substantially. Researchers are encouraged to manage the data as per the FAIR data principles and ensure that the raw data, metadata, processed data, software, codes and associated material are securely stored and the data be made available with the completion of the research. NEW INFORMATION: We have developed BEXIS2 as an open-source community-driven web-based research data management system to support research data management needs of mid to large-scale research projects with multiple sub-projects and up to several hundred researchers. BEXIS2 is a modular and extensible system providing a range of functions to realise the complete data lifecycle from data structure design to data collection, data discovery, dissemination, integration, quality assurance and research planning. It is an extensible and customisable system that allows for the development of new functions and customisation of its various components from database schemas to the user interface layout, elements and look and feel.During the development of BEXIS2, we aimed to incorporate key aspects of what is encoded in FAIR data principles. To investigate the extent to which BEXIS2 conforms to these principles, we conducted the self-assessment using the FAIR indicators, definitions and criteria provided in the FAIR Data Maturity Model. Even though the FAIR data maturity model is developed initially to judge the conformance of datasets, the self-assessment results indicated that BEXIS2 remarkably conforms and supports FAIR indicators. BEXIS2 strongly conforms to the indicators Findability and Accessibility. The indicator Interoperability is moderately supported as of now; however, for many of the lesssupported facets, we have concrete plans for improvement. Reusability (as defined by the FAIR data principles) is partially achieved.This paper also illustrates community deployment examples of the BEXIS2 instances as success stories to exemplify its capacity to meet the biodiversity and ecological data management needs of differently sized projects and serve as an organisational research data management system.

Indexed as

biodiversitydata lifecycleecologyenvironmental scienceFAIR data maturity modelFAIR data principlesopen-sourceresearch data management

Identifiers

PMID34785977
PMCPMC8589773

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.