Evidence map›Paper›PMID 34785679›Full record

ArticleNature communications2021

SARS-CoV-2 infection and replication in human gastric organoids.

Giovanni Giuseppe Giobbe, Francesco Bonfante, Brendan C Jones, Onelia Gagliano, Camilla Luni, Elisa Zambaiti, Silvia Perin, Cecilia Laterza, Georg Busslinger, Hannah Stuart and 15 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 52 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
52citing papers in PubMed, 1 pooled it
4.2field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

52 citing papers in PubMed, 1 synthesis or guideline pooled it, 82 citations in OpenAlex.

  1. Pooled it
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  11. A survey of SARS-CoV-2 tropism.Infectious diseases & immunity · 2025
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

25 authors at 11 institutions in 7 countries.

Giovanni Giuseppe Giobbe *Stem Cell and Regenerative Medicine Section, GOS Institute of Child Health, University College London, London, UK. g.giobbe@ucl.ac.uk.ORCID 0000-0001-6958-7303
Francesco Bonfante *Lab. of Experimental Animal Models, Division of Comparative Biomedical Sciences, Istituto Zooprofilattico Sperimentale delle Venezie, Legnaro, Italy.ORCID 0000-0002-1276-2710
Brendan C JonesStem Cell and Regenerative Medicine Section, GOS Institute of Child Health, University College London, London, UK.ORCID 0000-0002-2637-8859
Onelia GaglianoVeneto Institute of Molecular Medicine (VIMM), Padova, Italy.
Camilla LuniShanghai Institute for Advanced Immunochemical Studies (SIAIS), ShanghaiTech University, Shanghai, China.ORCID 0000-0002-1211-9629
Elisa ZambaitiStem Cell and Regenerative Medicine Section, GOS Institute of Child Health, University College London, London, UK.ORCID 0000-0002-9610-1708
Silvia PerinStem Cell and Regenerative Medicine Section, GOS Institute of Child Health, University College London, London, UK.ORCID 0000-0003-0160-6795
Cecilia LaterzaVeneto Institute of Molecular Medicine (VIMM), Padova, Italy.
Georg BusslingerOncode Institute, Hubrecht Institute, Royal Netherlands Academy of Arts and Sciences (KNAW) and University Medical Center (UMC) Utrecht, Utrecht, Netherlands.ORCID 0000-0002-7851-9895
Hannah StuartVeneto Institute of Molecular Medicine (VIMM), Padova, Italy.
Matteo PagliariLab. of Experimental Animal Models, Division of Comparative Biomedical Sciences, Istituto Zooprofilattico Sperimentale delle Venezie, Legnaro, Italy.
Alessio BortolamiLab. of Experimental Animal Models, Division of Comparative Biomedical Sciences, Istituto Zooprofilattico Sperimentale delle Venezie, Legnaro, Italy.ORCID 0000-0003-3381-8354
Eva MazzettoLab. of Experimental Animal Models, Division of Comparative Biomedical Sciences, Istituto Zooprofilattico Sperimentale delle Venezie, Legnaro, Italy.ORCID 0000-0001-7257-7958
Anna ManfrediTelethon Institute of Genetics and Medicine (TIGEM), Armenise/Harvard Laboratory of Integrative Genomics, Pozzuoli, Italy.
Chiara ColantuonoTelethon Institute of Genetics and Medicine (TIGEM), Armenise/Harvard Laboratory of Integrative Genomics, Pozzuoli, Italy.
Lucio Di FilippoTelethon Institute of Genetics and Medicine (TIGEM), Armenise/Harvard Laboratory of Integrative Genomics, Pozzuoli, Italy.
Alessandro Filippo PellegataStem Cell and Regenerative Medicine Section, GOS Institute of Child Health, University College London, London, UK.ORCID 0000-0002-5618-4641
Valentina PanzarinLab. of Experimental Animal Models, Division of Comparative Biomedical Sciences, Istituto Zooprofilattico Sperimentale delle Venezie, Legnaro, Italy.
Nikhil ThaparGastroenterology, Hepatology and Liver Transplant, Queensland Children's Hospital, Brisbane, Australia.
Vivian Sze Wing LiStem Cell and Cancer Biology Lab, the Francis Crick Institute, London, UK.ORCID 0000-0003-2041-0085
Simon EatonStem Cell and Regenerative Medicine Section, GOS Institute of Child Health, University College London, London, UK.ORCID 0000-0003-0892-9204
Davide CacchiarelliTelethon Institute of Genetics and Medicine (TIGEM), Armenise/Harvard Laboratory of Integrative Genomics, Pozzuoli, Italy.
Hans CleversOncode Institute, Hubrecht Institute, Royal Netherlands Academy of Arts and Sciences (KNAW) and University Medical Center (UMC) Utrecht, Utrecht, Netherlands.ORCID 0000-0002-3077-5582
Nicola ElvassoreStem Cell and Regenerative Medicine Section, GOS Institute of Child Health, University College London, London, UK. n.elvassore@ucl.ac.uk.ORCID 0000-0002-7029-6287
Paolo De CoppiStem Cell and Regenerative Medicine Section, GOS Institute of Child Health, University College London, London, UK. p.decoppi@ucl.ac.uk.ORCID 0000-0002-1659-0207
Istituto Zooprofilattico Sperimentale delle Venezie · ITTelethon Institute Of Genetics And Medicine · ITUniversity College London · GBVeneto Institute of Molecular Medicine · ITRoyal Netherlands Academy of Arts and Sciences · NLUniversity of Padua · ITChildren's Health Queensland Hospital and Health Service · AUGreat Ormond Street Hospital · GBInstitute for Stem Cell Biology and Regenerative Medicine · INShanghaiTech University · CNThe Francis Crick Institute · GB

Funding

Medical Research Council MR/R006237/1Wellcome Trust
6 · The paper itself

Abstract

COVID-19 typically manifests as a respiratory illness, but several clinical reports have described gastrointestinal symptoms. This is particularly true in children in whom gastrointestinal symptoms are frequent and viral shedding outlasts viral clearance from the respiratory system. These observations raise the question of whether the virus can replicate within the stomach. Here we generate gastric organoids from fetal, pediatric, and adult biopsies as in vitro models of SARS-CoV-2 infection. To facilitate infection, we induce reverse polarity in the gastric organoids. We find that the pediatric and late fetal gastric organoids are susceptible to infection with SARS-CoV-2, while viral replication is significantly lower in undifferentiated organoids of early fetal and adult origin. We demonstrate that adult gastric organoids are more susceptible to infection following differentiation. We perform transcriptomic analysis to reveal a moderate innate antiviral response and a lack of differentially expressed genes belonging to the interferon family. Collectively, we show that the virus can efficiently infect the gastric epithelium, suggesting that the stomach might have an active role in fecal-oral SARS-CoV-2 transmission.

Indexed as

Aborted FetusAgedAnimalsCell LineChildChild, PreschoolChlorocebus aethiopsCOVID-19HumansInfantIntestinal MucosaMiddle AgedOrganoidsSARS-CoV-2StomachVirus Replication

Identifiers

PMID34785679
PMCPMC8595698
OpenAlexW3213763559

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.