Evidence map›Paper›PMID 34783229›Full record

ArticleJournal of integrative bioinformatics2021

Glioblastoma gene network reconstruction and ontology analysis by online bioinformatics tools.

Natalya V Gubanova, Nina G Orlova, Arthur I Dergilev, Nina Y Oparina, Yuriy L Orlov

Open access · diamondAbstract read
In one paragraph

Article in Journal of integrative bioinformatics, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.8field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 10 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 5 institutions in 2 countries.

Natalya V GubanovaInstitute of Cytology and Genetics, Siberian Branch of the Russian Academy of Sciences, 630090 Novosibirsk, Russia.ORCID https://orcid.org/0000-0003-2940-3287
Nina G OrlovaFinancial University under the Government of the Russian Federation, 119991 Moscow, Russia.
Arthur I DergilevNovosibirsk State University, 630090 Novosibirsk, Russia.
Nina Y OparinaUniversity of Gothenburg, 405 30 Gothenburg, Sweden.
Yuriy L OrlovNovosibirsk State University, 630090 Novosibirsk, Russia.ORCID https://orcid.org/0000-0003-0587-1609
Financial University · RUInstitute of Cytology and Genetics · RUNovosibirsk State University · RUSechenov University · RUUniversity of Gothenburg · SE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Glioblastoma is the most aggressive type of brain tumors resistant to a number of antitumor drugs. The problem of therapy and drug treatment course is complicated by extremely high heterogeneity in the benign cell populations, the random arrangement of tumor cells, and polymorphism of their nuclei. The pathogenesis of gliomas needs to be studied using modern cellular technologies, genome- and transcriptome-wide technologies of high-throughput sequencing, analysis of gene expression on microarrays, and methods of modern bioinformatics to find new therapy targets. Functional annotation of genes related to the disease could be retrieved based on genetic databases and cross-validated by integrating complementary experimental data. Gene network reconstruction for a set of genes (proteins) proved to be effective approach to study mechanisms underlying disease progression. We used online bioinformatics tools for annotation of gene list for glioma, reconstruction of gene network and comparative analysis of gene ontology categories. The available tools and the databases for glioblastoma gene analysis are discussed together with the recent progress in this field.

Indexed as

Brain NeoplasmsGlioblastomaGliomaComputational BiologyGene Expression ProfilingGene Expression Regulation, NeoplasticGene OntologyGene Regulatory NetworksHumansdrug searchgene networksgene ontologyglioblastomamedical genomics

Identifiers

PMID34783229
PMCPMC8709738
OpenAlexW3214225217

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.