Evidence map›Paper›PMID 34782741›Full record

ArticleNature biotechnology2022

Sensitive identification of neoantigens and cognate TCRs in human solid tumors.

Marion Arnaud, Johanna Chiffelle, Raphael Genolet, Blanca Navarro Rodrigo, Marta A S Perez, Florian Huber, Morgane Magnin, Tu Nguyen-Ngoc, Philippe Guillaume, Petra Baumgaertner and 12 more

Open access · hybridAbstract read
In one paragraph

Article in Nature biotechnology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 60 papers.

0numbers the graph read from it
0cells of the map it votes in
60citing papers in PubMed
8.2field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

60 citing papers in PubMed, 96 citations in OpenAlex.

  1. Review
  2. Human Organoids as a Novel Tool for Vaccine Study.Advanced healthcare materials · 2026
    Review
  3. Article
  4. Review
  5. Article
  6. Molecular origin, discovery, validation and application of neoantigens.Asian journal of pharmaceutical sciences · 2026
    Review
  7. Article
  8. Article
  9. Facts and Hopes for Neoantigen-Enriched TIL.Clinical cancer research : an official journal of the American Association for Cancer Research · 2025
    Review
  10. Review
  11. Article
  12. Neuron-reactive KIRNature communications · 2025
    Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Leveraging T cells for cancer immunotherapy.Immunity & inflammation · 2025
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors at 3 institutions in 1 country.

Marion ArnaudLudwig Institute for Cancer Research, Lausanne Branch - University of Lausanne (UNIL), Lausanne, Switzerland.ORCID http://orcid.org/0000-0003-0534-2379
Johanna ChiffelleLudwig Institute for Cancer Research, Lausanne Branch - University of Lausanne (UNIL), Lausanne, Switzerland.ORCID http://orcid.org/0000-0002-8312-2681
Raphael GenoletLudwig Institute for Cancer Research, Lausanne Branch - University of Lausanne (UNIL), Lausanne, Switzerland.
Blanca Navarro RodrigoLudwig Institute for Cancer Research, Lausanne Branch - University of Lausanne (UNIL), Lausanne, Switzerland.
Marta A S PerezLudwig Institute for Cancer Research, Lausanne Branch - University of Lausanne (UNIL), Lausanne, Switzerland.ORCID http://orcid.org/0000-0002-3963-5965
Florian HuberLudwig Institute for Cancer Research, Lausanne Branch - University of Lausanne (UNIL), Lausanne, Switzerland.
Morgane MagninLudwig Institute for Cancer Research, Lausanne Branch - University of Lausanne (UNIL), Lausanne, Switzerland.ORCID http://orcid.org/0000-0002-9808-8973
Tu Nguyen-NgocLudwig Institute for Cancer Research, Lausanne Branch - University of Lausanne (UNIL), Lausanne, Switzerland.ORCID http://orcid.org/0000-0001-7574-2947
Philippe GuillaumeLudwig Institute for Cancer Research, Lausanne Branch - University of Lausanne (UNIL), Lausanne, Switzerland.
Petra BaumgaertnerLudwig Institute for Cancer Research, Lausanne Branch - University of Lausanne (UNIL), Lausanne, Switzerland.
Chloe ChongLudwig Institute for Cancer Research, Lausanne Branch - University of Lausanne (UNIL), Lausanne, Switzerland.
Brian J StevensonLudwig Institute for Cancer Research, Lausanne Branch - University of Lausanne (UNIL), Lausanne, Switzerland.
David GfellerLudwig Institute for Cancer Research, Lausanne Branch - University of Lausanne (UNIL), Lausanne, Switzerland.ORCID http://orcid.org/0000-0002-3952-0930
Melita IrvingLudwig Institute for Cancer Research, Lausanne Branch - University of Lausanne (UNIL), Lausanne, Switzerland.ORCID http://orcid.org/0000-0002-6849-7194
Daniel E SpeiserLudwig Institute for Cancer Research, Lausanne Branch - University of Lausanne (UNIL), Lausanne, Switzerland.ORCID http://orcid.org/0000-0003-2031-3250
Julien SchmidtLudwig Institute for Cancer Research, Lausanne Branch - University of Lausanne (UNIL), Lausanne, Switzerland.
Vincent ZoeteLudwig Institute for Cancer Research, Lausanne Branch - University of Lausanne (UNIL), Lausanne, Switzerland.ORCID http://orcid.org/0000-0002-2336-6537
Lana E KandalaftLudwig Institute for Cancer Research, Lausanne Branch - University of Lausanne (UNIL), Lausanne, Switzerland.ORCID http://orcid.org/0000-0002-1575-6674
Michal Bassani-SternbergLudwig Institute for Cancer Research, Lausanne Branch - University of Lausanne (UNIL), Lausanne, Switzerland.ORCID http://orcid.org/0000-0002-1934-954X
Sara BobisseLudwig Institute for Cancer Research, Lausanne Branch - University of Lausanne (UNIL), Lausanne, Switzerland.
George Coukos *Ludwig Institute for Cancer Research, Lausanne Branch - University of Lausanne (UNIL), Lausanne, Switzerland. george.coukos@chuv.ch.ORCID http://orcid.org/0000-0001-8813-7367
Alexandre Harari *Ludwig Institute for Cancer Research, Lausanne Branch - University of Lausanne (UNIL), Lausanne, Switzerland. alexandre.harari@chuv.ch.ORCID http://orcid.org/0000-0002-1055-2090
University Hospital of Lausanne · CHSIB Swiss Institute of Bioinformatics · CHLudwig Cancer Research · CH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The identification of patient-specific tumor antigens is complicated by the low frequency of T cells specific for each tumor antigen. Here we describe NeoScreen, a method that enables the sensitive identification of rare tumor (neo)antigens and of cognate T cell receptors (TCRs) expressed by tumor-infiltrating lymphocytes. T cells transduced with tumor antigen-specific TCRs identified by NeoScreen mediate regression of established tumors in patient-derived xenograft mice.

Indexed as

NeoplasmsReceptors, Antigen, T-CellAnimalsAntigens, NeoplasmCD8-Positive T-LymphocytesHumansLymphocytes, Tumor-InfiltratingMiceT-LymphocytesAntigens, NeoplasmReceptors, Antigen, T-Cell

Identifiers

PMID34782741
PMCPMC9110298
OpenAlexW3211956434

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.