Evidence map›Paper›PMID 34782681›Full record

ArticleScientific reports2021

SARS-CoV-2 detection using reverse transcription strand invasion based amplification and a portable compact size instrument.

Maiken W Rosenstierne, Shreya Joshi, E Thomas Danielsen, Helen Webb, Dac Mui Luong, Julie Bjerring, Julie Hindkær, Lærke Jørgensen, Julie Blauenfeldt, Ask Bojesen and 22 more

Abstract readComparative Study
In one paragraph

Article in Scientific reports, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

32 authors.

Maiken W RosenstierneQlife, Borupvang 3, 2750 Ballerup & Symbion, Fruebjergvej 3, 2100, Copenhagen, Denmark. Mwr@egoo.health.
Shreya JoshiQlife, Borupvang 3, 2750 Ballerup & Symbion, Fruebjergvej 3, 2100, Copenhagen, Denmark.
E Thomas DanielsenQlife, Borupvang 3, 2750 Ballerup & Symbion, Fruebjergvej 3, 2100, Copenhagen, Denmark.
Helen WebbQlife, Borupvang 3, 2750 Ballerup & Symbion, Fruebjergvej 3, 2100, Copenhagen, Denmark.
Dac Mui LuongQlife, Borupvang 3, 2750 Ballerup & Symbion, Fruebjergvej 3, 2100, Copenhagen, Denmark.
Julie BjerringQlife, Borupvang 3, 2750 Ballerup & Symbion, Fruebjergvej 3, 2100, Copenhagen, Denmark.
Julie HindkærQlife, Borupvang 3, 2750 Ballerup & Symbion, Fruebjergvej 3, 2100, Copenhagen, Denmark.
Lærke JørgensenQlife, Borupvang 3, 2750 Ballerup & Symbion, Fruebjergvej 3, 2100, Copenhagen, Denmark.
Julie BlauenfeldtQlife, Borupvang 3, 2750 Ballerup & Symbion, Fruebjergvej 3, 2100, Copenhagen, Denmark.
Ask BojesenQlife, Borupvang 3, 2750 Ballerup & Symbion, Fruebjergvej 3, 2100, Copenhagen, Denmark.
Flemming HolckQlife, Borupvang 3, 2750 Ballerup & Symbion, Fruebjergvej 3, 2100, Copenhagen, Denmark.
Johnny Weber LauQlife, Borupvang 3, 2750 Ballerup & Symbion, Fruebjergvej 3, 2100, Copenhagen, Denmark.
Lars BangsgaardQlife, Borupvang 3, 2750 Ballerup & Symbion, Fruebjergvej 3, 2100, Copenhagen, Denmark.
Jakob Broberg LindQlife, Borupvang 3, 2750 Ballerup & Symbion, Fruebjergvej 3, 2100, Copenhagen, Denmark.
Mette Bjergaard DragheimQlife, Borupvang 3, 2750 Ballerup & Symbion, Fruebjergvej 3, 2100, Copenhagen, Denmark.
Mikkel Rohde JacobsenQlife, Borupvang 3, 2750 Ballerup & Symbion, Fruebjergvej 3, 2100, Copenhagen, Denmark.
Robert ElkjærQlife, Borupvang 3, 2750 Ballerup & Symbion, Fruebjergvej 3, 2100, Copenhagen, Denmark.
Steven ClauwaertQlife, Borupvang 3, 2750 Ballerup & Symbion, Fruebjergvej 3, 2100, Copenhagen, Denmark.
Kristina ChristensenQlife, Borupvang 3, 2750 Ballerup & Symbion, Fruebjergvej 3, 2100, Copenhagen, Denmark.
Charlotta PolacekDepartment of Virus and Microbiological Special Diagnostics, Statens Serum Institut, Artillerivej 5, 2300, Copenhagen, Denmark.
Anders FomsgaardDepartment of Virus and Microbiological Special Diagnostics, Statens Serum Institut, Artillerivej 5, 2300, Copenhagen, Denmark.
Tuomas OjalehtoAidian Oy, Espoo, Finland.
Antti TullilaAidian Oy, Espoo, Finland.
Mirko BrummerAidian Oy, Espoo, Finland.
Claus Juel JensenKlinisk Biokemisk Afdeling, Nordsjællands Hospital, Dyrehavevej 29, 3400, Hillerød, Denmark.
Frederikke Holm JensenAmager og Hvidovre Hospital, Klinisk Mikrobiologisk Afdeling, afsnit 445, Kettegård Allé 30, 2650, Hvidovre, Denmark.
Uffe Vest SchneiderAmager og Hvidovre Hospital, Klinisk Mikrobiologisk Afdeling, afsnit 445, Kettegård Allé 30, 2650, Hvidovre, Denmark.
Jan Gorm LisbyAmager og Hvidovre Hospital, Klinisk Mikrobiologisk Afdeling, afsnit 445, Kettegård Allé 30, 2650, Hvidovre, Denmark.
Rikke Lind JørgensenAmager og Hvidovre Hospital, Klinisk Mikrobiologisk Afdeling, afsnit 445, Kettegård Allé 30, 2650, Hvidovre, Denmark.
Thomas WarthoeQlife, Borupvang 3, 2750 Ballerup & Symbion, Fruebjergvej 3, 2100, Copenhagen, Denmark.
Ebbe FindingQlife, Borupvang 3, 2750 Ballerup & Symbion, Fruebjergvej 3, 2100, Copenhagen, Denmark.
Peter WarthoeQlife, Borupvang 3, 2750 Ballerup & Symbion, Fruebjergvej 3, 2100, Copenhagen, Denmark.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Rapid nucleic-acid based tests that can be performed by non-professionals outside laboratory settings could help the containment of the pandemic SARS-CoV-2 virus and may potentially prevent further widespread lockdowns. Here, we present a novel compact portable detection instrument (the Egoo Health System) for extraction-free detection of SARS-CoV-2 using isothermal reverse transcription strand invasion based amplification (RT-SIBA). The SARS-CoV-2 RT-SIBA assay can be performed directly on crude oropharyngeal swabs without nucleic acid extraction with a reaction time of 30 min. The Egoo Health system uses a capsule system, which is automatically sealed tight in the Egoo instrument after applying the sample, resulting in a closed system optimal for molecular isothermal amplification. The performance of the Egoo Health System is comparable to the PCR instrument with an analytical sensitivity of 25 viral RNA copies per SARS-CoV-2 RT-SIBA reaction and a clinical sensitivity and specificity between 87.0-98.4% and 96.6-98.2% respectively.

Indexed as

Equipment DesignCell PhoneCOVID-19HumansMobile ApplicationsMolecular Diagnostic TechniquesOropharynxPandemicsPoint-of-Care TestingPolymorphism, Single NucleotideRetrospective StudiesReverse Transcriptase Polymerase Chain ReactionRNA, ViralSARS-CoV-2Sensitivity and SpecificityRNA, Viral

Identifiers

PMID34782681
PMCPMC8593107

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.