Evidence map›Paper›PMID 34782625›Full record

ArticleNature communications2021

Multiple stages of evolutionary change in anthrax toxin receptor expression in humans.

Lauren A Choate, Gilad Barshad, Pierce W McMahon, Iskander Said, Edward J Rice, Paul R Munn, James J Lewis, Charles G Danko

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.6field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 12 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Lauren A ChoateBaker Institute for Animal Health, College of Veterinary Medicine, Cornell University, Ithaca, NY, 14853, USA.ORCID http://orcid.org/0000-0003-4246-0550
Gilad BarshadBaker Institute for Animal Health, College of Veterinary Medicine, Cornell University, Ithaca, NY, 14853, USA.ORCID http://orcid.org/0000-0001-7845-7658
Pierce W McMahonBaker Institute for Animal Health, College of Veterinary Medicine, Cornell University, Ithaca, NY, 14853, USA.
Iskander SaidDepartment of Molecular Biology and Genetics, Cornell University, Ithaca, NY, 14853, USA.
Edward J RiceBaker Institute for Animal Health, College of Veterinary Medicine, Cornell University, Ithaca, NY, 14853, USA.
Paul R MunnBaker Institute for Animal Health, College of Veterinary Medicine, Cornell University, Ithaca, NY, 14853, USA.
James J LewisBaker Institute for Animal Health, College of Veterinary Medicine, Cornell University, Ithaca, NY, 14853, USA. jjl336@cornell.edu.ORCID http://orcid.org/0000-0002-4170-9118
Charles G DankoBaker Institute for Animal Health, College of Veterinary Medicine, Cornell University, Ithaca, NY, 14853, USA. dankoc@gmail.com.ORCID http://orcid.org/0000-0002-1999-7125
Cornell University · US

Funding

Evolution of Chromatin Architecture and Transcriptional Regulation in MammalsR01HG010346 · NHGRI · CORNELL UNIVERSITY · PI DANKO, CHARLES GRAHE, SIEPEL, ADAM CHARLES · 2019 to 2022
$2.7M
Mapping RNA polymerase in tissue samples with ChRO-seq.R01HG009309 · NHGRI · CORNELL UNIVERSITY · PI DANKO, CHARLES GRAHE · 2017 to 2021
$1.9M
Host-pathogen interactions drive regulatory evolution of the anthrax toxin receptorF31AI140050 · NIAID · CORNELL UNIVERSITY · PI CHOATE, LAUREN ASHLEY · 2019 to 2019
$37k
NHGRI NIH HHS R01 HG009309NHGRI NIH HHS R01 HG010346NIAID NIH HHS F31 AI140050
6 · The paper itself

Abstract

The advent of animal husbandry and hunting increased human exposure to zoonotic pathogens. To understand how a zoonotic disease may have influenced human evolution, we study changes in human expression of anthrax toxin receptor 2 (ANTXR2), which encodes a cell surface protein necessary for Bacillus anthracis virulence toxins to cause anthrax disease. In immune cells, ANTXR2 is 8-fold down-regulated in all available human samples compared to non-human primates, indicating regulatory changes early in the evolution of modern humans. We also observe multiple genetic signatures consistent with recent positive selection driving a European-specific decrease in ANTXR2 expression in multiple tissues affected by anthrax toxins. Our observations fit a model in which humans adapted to anthrax disease following early ecological changes associated with hunting and scavenging, as well as a second period of adaptation after the rise of modern agriculture.

Indexed as

Evolution, MolecularGene Expression RegulationAnimalsAntigens, BacterialBacillus anthracisBacterial ToxinsCell LineDown-RegulationHumansK562 CellsMembrane ProteinsReceptors, PeptideVirulenceZoonosesanthrax toxinanthrax toxin receptorsAntigens, BacterialANTXR2 protein, humanBacterial ToxinsMembrane ProteinsReceptors, Peptide

Identifiers

PMID34782625
PMCPMC8592990
OpenAlexW3214356417

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.