Evidence map›Paper›PMID 34780538›Full record

ArticlePloS one2021

Escherichia coli O127 group 4 capsule proteins assemble at the outer membrane.

Matthew R Larson, Kassia Biddle, Adam Gorman, Sarah Boutom, Ilan Rosenshine, Mark A Saper

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.4field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 8 citations in OpenAlex.

  1. Article
  2. Article
  3. Evolutionary genomic analyses of canineApplied and environmental microbiology · 2024
    Article
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Matthew R LarsonDepartment of Biological Chemistry, University of Michigan, Ann Arbor, Michigan, United States of America.ORCID 0000-0003-2116-5747
Kassia BiddleDepartment of Biological Chemistry, University of Michigan, Ann Arbor, Michigan, United States of America.
Adam GormanDepartment of Biological Chemistry, University of Michigan, Ann Arbor, Michigan, United States of America.ORCID 0000-0001-5775-8355
Sarah BoutomDepartment of Biological Chemistry, University of Michigan, Ann Arbor, Michigan, United States of America.ORCID 0000-0002-0440-5035
Ilan RosenshineDept of Microbiology and Molecular Genetics, Hebrew University Faculty of Medicine, Ein Kerem, Jerusalem, Israel.
Mark A SaperDepartment of Biological Chemistry, University of Michigan, Ann Arbor, Michigan, United States of America.ORCID 0000-0002-0685-1071
University of Michigan · USHebrew University of Jerusalem · IL

Funding

Crystallization of outer membrane proteins for export of polysaccharide capsuleR21AI088543 · NIAID · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI SAPER, MARK A · 2011 to 2012
$413k
NIAID NIH HHS R21 AI088543
6 · The paper itself

Abstract

Enteropathogenic Escherichia coli O127 is encapsulated by a protective layer of polysaccharide made of the same strain specific O-antigen as the serotype lipopolysaccharide. Seven genes encoding capsule export functions comprise the group 4 capsule (gfc) operon. Genes gfcE, etk and etp encode homologs of the group 1 capsule secretion system but the upstream gfcABCD genes encode unknown functions specific to group 4 capsule export. We have developed an expression system for the large-scale production of the outer membrane protein GfcD. Contrary to annotations, we find that GfcD is a non-acylated integral membrane protein. Circular dichroism spectroscopy, light-scattering data, and the HHomp server suggested that GfcD is a monomeric β-barrel with 26 β-strands and an internal globular domain. We identified a set of novel protein-protein interactions between GfcB, GfcC, and GfcD, both in vivo and in vitro, and quantified the binding properties with isothermal calorimetry and biolayer interferometry. GfcC and GfcB form a high-affinity heterodimer with a KD near 100 nM. This heterodimer binds to GfcD (KD = 28 μM) significantly better than either GfcB or GfcC alone. These gfc proteins may form a complex at the outer membrane for group 4 capsule secretion or for a yet unknown function.

Indexed as

Bacterial Outer MembraneCalorimetryCircular DichroismDynamic Light ScatteringEnteropathogenic Escherichia coliEscherichia coli ProteinsO AntigensOperonProtein MultimerizationProtein Structure, SecondaryEscherichia coli ProteinsO Antigens

Identifiers

PMID34780538
PMCPMC8592465
OpenAlexW3211625924

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.