Evidence map›Paper›PMID 34780465›Full record

ArticlePLoS genetics2021

Repression of the Hox gene abd-A by ELAV-mediated Transcriptional Interference.

Javier J Castro Alvarez, Maxime Revel, Judit Carrasco, Fabienne Cléard, Daniel Pauli, Valérie Hilgers, François Karch, Robert K Maeda

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.6field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 8 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Transcriptional Readthrough Interrupts Boundary Function in Drosophila.International journal of molecular sciences · 2023
    Article
  5. Article
  6. Transcriptional read through interrupts boundary function in Drosophila.bioRxiv : the preprint server for biology · 2023
    Article
  7. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Javier J Castro AlvarezDepartment of Genetics and Evolution, University of Geneva, Geneva, Switzerland.
Maxime RevelDepartment of Genetics and Evolution, University of Geneva, Geneva, Switzerland.ORCID 0000-0002-6966-0109
Judit CarrascoMax-Planck-Institute of Immunobiology and Epigenetics, Freiburg, Germany.ORCID 0000-0002-4619-9452
Fabienne CléardDepartment of Genetics and Evolution, University of Geneva, Geneva, Switzerland.ORCID 0000-0003-0694-4822
Daniel PauliDepartment of Genetics and Evolution, University of Geneva, Geneva, Switzerland.ORCID 0000-0001-9554-9159
Valérie HilgersMax-Planck-Institute of Immunobiology and Epigenetics, Freiburg, Germany.ORCID 0000-0002-4551-0931
François KarchDepartment of Genetics and Evolution, University of Geneva, Geneva, Switzerland.ORCID 0000-0003-4722-5170
Robert K MaedaDepartment of Genetics and Evolution, University of Geneva, Geneva, Switzerland.ORCID 0000-0001-6555-1215
University of Geneva · CHMax Planck Institute of Immunobiology and Epigenetics · DEUniversity of Freiburg · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Intergenic transcription is a common feature of eukaryotic genomes and performs important and diverse cellular functions. Here, we investigate the iab-8 ncRNA from the Drosophila Bithorax Complex and show that this RNA is able to repress the transcription of genes located at its 3' end by a sequence-independent, transcriptional interference mechanism. Although this RNA is expressed in the early epidermis and CNS, we find that its repressive activity is limited to the CNS, where, in wild-type embryos, it acts on the Hox gene, abd-A, located immediately downstream of it. The CNS specificity is achieved through a 3' extension of the transcript, mediated by the neuronal-specific, RNA-binding protein, ELAV. Loss of ELAV activity eliminates the 3' extension and results in the ectopic activation of abd-A. Thus, a tissue-specific change in the length of a ncRNA is used to generate a precise pattern of gene expression in a higher eukaryote.

Indexed as

Genes, HomeoboxTranscription, GeneticAnimalsClustered Regularly Interspaced Short Palindromic RepeatsDrosophila melanogasterDrosophila ProteinsELAV ProteinsGenes, ReporterMicroRNAsNuclear ProteinsRNA, Long NoncodingSequence DeletionTranscription Factorsabd-A protein, DrosophilaDrosophila ProteinsELAV protein, DrosophilaELAV ProteinsMicroRNAsNuclear ProteinsRNA, Long NoncodingTranscription Factors

Identifiers

PMID34780465
PMCPMC8629391
OpenAlexW3214341870

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.