Evidence map›Paper›PMID 34779943›Full record

ArticleEuropean journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology2021

Molecular epidemiology of extended-spectrum beta-lactamase-producing extra-intestinal pathogenic Escherichia coli strains over a 2-year period (2017-2019) from Zimbabwe.

Faustinos Tatenda Takawira, Johann Dd Pitout, Gaetän Thilliez, Tapfumanei Mashe, Ana Victoria Gutierrez, Robert A Kingsley, Gisele Peirano, Jorge Matheu, Stanley M Midzi, Lusubilo W Mwamakamba and 6 more

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In one paragraph

Article in European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.4field-weighted citation impact, top 50% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 7 citations in OpenAlex.

  1. Review
  2. Article
  3. Antimicrobial agents and chemotherapy · 2024
    Review
  4. Article
  5. Detection of Clones B2-ST131-C2 and A-ST617 inAntibiotics (Basel, Switzerland) · 2022
    Article
  6. Faecal carriage of ESBL producing and colistin resistantFrontiers in cellular and infection microbiology · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 10 institutions in 6 countries.

Faustinos Tatenda TakawiraDepartment of Medical Microbiology, University of Pretoria, Pretoria, South Africa.
Johann Dd PitoutDepartment of Medical Microbiology, University of Pretoria, Pretoria, South Africa.
Gaetän ThilliezQuadram Institute Biosciences, Norwich, UK.
Tapfumanei MasheDepartment of Medical Microbiology, University of Pretoria, Pretoria, South Africa.
Ana Victoria GutierrezQuadram Institute Biosciences, Norwich, UK.
Robert A KingsleyQuadram Institute Biosciences, Norwich, UK.
Gisele PeiranoDepartment of Microbiology, Alberta Precision Laboratories, Department Pathology and Laboratory Medicine, Cummings School of Medicine, University of Calgary, Calgary, AB, Canada.
Jorge MatheuWorld Health Organization (WHO), Geneva, Switzerland.
Stanley M MidziWorld Health Organization (WHO), Harare, Zimbabwe.
Lusubilo W MwamakambaWorld Health Organization (WHO), Brazzaville, Republic of Congo.
David L GallyDivision of Infection and Immunity, The Roslin Institute, The University of Edinburgh, Edinburgh, Scotland.
Andrew TarupiwaNational Microbiology Reference Laboratory, Harare, Zimbabwe.
Leckson MukavhiUniversity of Zimbabwe College of Health Sciences, Health Professions Education, Harare, Zimbabwe.
Marthie M EhlersDepartment of Medical Microbiology, University of Pretoria, Pretoria, South Africa.
Sekesai Mtapuri-ZinyoweraNational Microbiology Reference Laboratory, Harare, Zimbabwe.
Marleen M KockDepartment of Medical Microbiology, University of Pretoria, Pretoria, South Africa. marleen.kock@up.ac.za.
National Blood Service Zimbabwe · ZWQuadram Institute · GBNational Health Laboratory Service · ZAUniversity of Calgary · CAUniversity of Edinburgh · GBUniversity of Pretoria · ZAUniversity of Zimbabwe · ZWWorld Health Organization · CHWorld Health Organization Regional Office for Africa · CGWorld Health Organization - Zimbabwe · ZW

Funding

World Health Organization 001
6 · The paper itself

Abstract

This study was designed to characterize extended-spectrum beta-lactamase (ESBL)-producing extra-intestinal pathogenic Escherichia coli (E.coli) (ExPEC) associated with urinary tract infections in nine different geographic regions of Zimbabwe over a 2-year period (2017-2019). A total of 48 ESBL-positive isolates from urine specimen were selected for whole-genome sequencing from 1246 Escherichia coli isolates biobanked at the National Microbiology Reference laboratory using phenotypic susceptibility testing results from the National Escherichia coli Surveillance Programme to provide representation of different geographical regions and year of isolation. The majority of ESBL E. coli isolates produced cefotaximase-Munich (CTX-M)-15, CTX-M-27, and CTX-M-14. In this study, sequence types (ST) 131 and ST410 were the most predominant antimicrobial-resistant clones and responsible for the increase in ESBL-producing E. coli strains since 2017. Novel ST131 complex strains were recorded during the period 2017 to 2018, thus showing the establishment and evolution of this antimicrobial-resistant ESBL clone in Zimbabwe posing an important public health threat. Incompatibility group F plasmids were predominant among ST131 and ST410 isolates with the following replicons recorded most frequently: F1:A2:B20 (9/19, 47%), F2:A1: B (5/19, 26%), and F1:A1:B49 (8/13, 62%). The results indicate the need for continuous tracking of different ESBL ExPEC clones on a global scale, while targeting specific STs (e.g. ST131 and ST410) through control programs will substantially decrease the spread of ESBLs among ExPEC.

Indexed as

C1-M27ESBLEscherichia coliST131ST410Zimbabwe

Identifiers

PMID34779943
OpenAlexW3212958722

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.