Evidence map›Paper›PMID 34778799›Full record

ArticleBlood cancer discovery2021

Integrative Genomic Analysis of Pediatric Myeloid-Related Acute Leukemias Identifies Novel Subtypes and Prognostic Indicators.

Maarten Fornerod, Jing Ma, Sanne Noort, Yu Liu, Michael P Walsh, Lei Shi, Stephanie Nance, Yanling Liu, Yuanyuan Wang, Guangchun Song and 30 more

Abstract read
In one paragraph

Article in Blood cancer discovery, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed.

  1. Review
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  10. Haematologica · 2024
    Article
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  12. medRxiv : the preprint server for health sciences · 2023
    Article
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  15. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

40 authors.

Maarten Fornerod *Department of Cell Biology, Erasmus Medical Center, Rotterdam, the Netherlands. tagruber@stanford.edu m.fornerod@erasmusmc.nl.ORCID 0000-0002-6166-3030
Jing Ma *Department of Pathology, St. Jude Children's Research Hospital, Memphis, Tennessee.
Sanne Noort *Department of Pediatric Oncology Hematology, Erasmus Medical Center-Sophia Children's Hospital, Rotterdam, the Netherlands.
Yu LiuPediatric Translational Medicine Institute, Shanghai Children's Medical Center, Shanghai Jiao Tong University School of Medicine, Shanghai, China.
Michael P WalshDepartment of Pathology, St. Jude Children's Research Hospital, Memphis, Tennessee.
Lei ShiDepartment of Biostatistics, St. Jude Children's Research Hospital, Memphis, Tennessee.
Stephanie NanceDepartment of Oncology, St. Jude Children's Research Hospital, Memphis, Tennessee.
Yanling LiuDepartment of Computational Biology, St. Jude Children's Research Hospital, Memphis, Tennessee.
Yuanyuan WangDepartment of Oncology, St. Jude Children's Research Hospital, Memphis, Tennessee.
Guangchun SongDepartment of Pathology, St. Jude Children's Research Hospital, Memphis, Tennessee.ORCID 0000-0001-9626-2598
Tamara LamprechtDepartment of Pathology, St. Jude Children's Research Hospital, Memphis, Tennessee.
John EastonDepartment of Computational Biology, St. Jude Children's Research Hospital, Memphis, Tennessee.
Heather L MulderDepartment of Computational Biology, St. Jude Children's Research Hospital, Memphis, Tennessee.ORCID 0000-0003-2024-9498
Donald YergeauDepartment of Computational Biology, St. Jude Children's Research Hospital, Memphis, Tennessee.ORCID 0000-0002-5713-5243
Jacquelyn MyersDepartment of Oncology, St. Jude Children's Research Hospital, Memphis, Tennessee.
Jennifer L KamensDepartment of Pediatrics, Stanford University School of Medicine, Stanford, California.
Esther A ObengDepartment of Oncology, St. Jude Children's Research Hospital, Memphis, Tennessee.ORCID 0000-0002-8691-7439
Martina PigazziDepartment of Women's and Children's Health, Hematology Oncology Clinic and Lab, University of Padova, IRP, Padova, Italy.ORCID 0000-0002-4793-5263
Marie JarosovaDepartment of Internal Medicine Hematology and Oncology Center of Molecular Biology and Gene Therapy, Masaryk University Hospital, Brno, Czech Republic.
Charikleia KelaidiDepartment of Pediatric Hematology and Oncology Aghia Sophia Children's Hospital, Athens, Greece.
Sophia PolychronopoulouDepartment of Pediatric Hematology and Oncology Aghia Sophia Children's Hospital, Athens, Greece.
Jatinder K LambaDepartment of Pharmacotherapy and Translational Research, College of Pharmacy, University of Florida, Gainesville, Florida.ORCID 0000-0003-0411-0007
Sharyn D BakerDivision of Pharmaceutics, College of Pharmacy and Comprehensive Cancer Center, The Ohio State University, Columbus, Ohio.
Jeffrey E RubnitzDepartment of Oncology, St. Jude Children's Research Hospital, Memphis, Tennessee.ORCID 0000-0001-9885-3527
Marry M van den Heuvel-Eibrink
Jeffery M KlcoDepartment of Pathology, St. Jude Children's Research Hospital, Memphis, Tennessee.ORCID 0000-0003-2961-6960
James R DowningDepartment of Pathology, St. Jude Children's Research Hospital, Memphis, Tennessee.
Jinghui ZhangDepartment of Computational Biology, St. Jude Children's Research Hospital, Memphis, Tennessee.ORCID 0000-0003-3350-9682
Stanley PoundsDepartment of Biostatistics, St. Jude Children's Research Hospital, Memphis, Tennessee.
C Michel Zwaan *
Tanja A Gruber *
Berlin-Frankfurt-Munster Study Group (BFM)
Dutch Children's Oncology Group (DCOG)
Associazione Italiana di Ematologia e Oncologia Pediatrica (AIEOP)
Nordic Society for Pediatric Hematology and Oncology (NOPHO)
Dutch Children's Oncology Group (DCOG)
for St. Jude Children's Research Hospital Study Group (SJCRH)

Funding

Pharmacogenomics of Ara-C in AMLR01CA132946 · NCI · UNIVERSITY OF MINNESOTA · PI LAMBA, JATINDER K., POUNDS, STANLEY BARRETT · 2008 to 2025
$5.3M
Tyrosine kinase inhibitors for the treatment of childhood AMLR01CA138744 · NCI · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI BAKER, SHARYN D · 2010 to 2019
$3.3M
NCI NIH HHS R01 CA132946NCI NIH HHS R01 CA138744
6 · The paper itself

Abstract

Genomic characterization of pediatric patients with acute myeloid leukemia (AML) has led to the discovery of somatic mutations with prognostic implications. Although gene-expression profiling can differentiate subsets of pediatric AML, its clinical utility in risk stratification remains limited. Here, we evaluate gene expression, pathogenic somatic mutations, and outcome in a cohort of 435 pediatric patients with a spectrum of pediatric myeloid-related acute leukemias for biological subtype discovery. This analysis revealed 63 patients with varying immunophenotypes that span a T-lineage and myeloid continuum designated as acute myeloid/T-lymphoblastic leukemia (AMTL). Within AMTL, two patient subgroups distinguished by SIGNIFICANCE: Immunophenotype and somatic mutations play a significant role in treatment approach and risk stratification of acute leukemia. We conducted an integrated genomic analysis of pediatric myeloid malignancies and found that a combination of genetic and transcriptional readouts was superior to immunophenotype and genomic mutations in identifying biological subtypes and predicting outcomes.

Indexed as

Leukemia, Myeloid, AcuteChildGene Expression ProfilingGenomicsHumansMutationPrognosis

Identifiers

PMID34778799
PMCPMC8580615

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.