Evidence map›Paper›PMID 34778776›Full record

ArticleRSC medicinal chemistry2021

A novel compound active against SARS-CoV-2 targeting uridylate-specific endoribonuclease (NendoU/NSP15):

Sumit Kumar, Yash Gupta, Samantha E Zak, Charu Upadhyay, Neha Sharma, Andrew S Herbert, Ravi Durvasula, Vladimir Potemkin, John M Dye, Poonam and 2 more

Open access · greenAbstract read
In one paragraph

Article in RSC medicinal chemistry, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
4.7field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 25 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 3 countries.

Sumit KumarDepartment of Chemistry, Miranda House, University of Delhi Delhi India poonam.chemistry@mirandahouse.ac.in.
Yash GuptaDivision of Infectious Diseases Mayo Clinic, Jacksonville Florida USA Kempaiah.Prakasha@mayo.edu.ORCID https://orcid.org/0000-0003-3002-1315
Samantha E ZakUnited States Army Medical Research Institute of Infectious Diseases Fort Detrick MD USA.
Charu UpadhyayDepartment of Chemistry, Miranda House, University of Delhi Delhi India poonam.chemistry@mirandahouse.ac.in.
Neha SharmaLaboratory for Translational Chemistry and Drug Discovery, Department of Chemistry, Hansraj College, University of Delhi India brijeshrathi@hrc.du.ac.in.
Andrew S HerbertUnited States Army Medical Research Institute of Infectious Diseases Fort Detrick MD USA.
Ravi DurvasulaDivision of Infectious Diseases Mayo Clinic, Jacksonville Florida USA Kempaiah.Prakasha@mayo.edu.
Vladimir PotemkinSouth Ural State University, Laboratory of Computational Modelling of Drugs 454080 Russia.ORCID https://orcid.org/0000-0002-5244-8718
John M DyeUnited States Army Medical Research Institute of Infectious Diseases Fort Detrick MD USA.
PoonamDepartment of Chemistry, Miranda House, University of Delhi Delhi India poonam.chemistry@mirandahouse.ac.in.ORCID https://orcid.org/0000-0002-3759-1057
Prakasha KempaiahDivision of Infectious Diseases Mayo Clinic, Jacksonville Florida USA Kempaiah.Prakasha@mayo.edu.
Brijesh RathiLaboratory for Translational Chemistry and Drug Discovery, Department of Chemistry, Hansraj College, University of Delhi India brijeshrathi@hrc.du.ac.in.ORCID https://orcid.org/0000-0003-2133-8847
University of Delhi · INMayo Clinic in Florida · USUnited States Army Medical Research Institute of Infectious Diseases · USSouth Ural State University · RU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

NendoU (NSP15) is an Mn(2+)-dependent, uridylate-specific enzyme, which leaves 2'-3'-cyclic phosphates 5' to the cleaved bond. Our in-house library was subjected to high throughput virtual screening (HTVS) to identify compounds with potential to inhibit NendoU enzyme, high-rank compounds (those that bound to multiple target structures) were further subjected to 100 nanoseconds MD simulations. Among these, one was found to be bound highly stable within the active site of the NendoU protein structure. Here, we are reporting a derivative of piperazine based '(2

Identifiers

PMID34778776
PMCPMC8528204
OpenAlexW3194250534

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.