Evidence map›Paper›PMID 34777482›Full record

ArticleFrontiers in genetics2021

singlecellVR: Interactive Visualization of Single-Cell Data in Virtual Reality.

David F Stein, Huidong Chen, Michael E Vinyard, Qian Qin, Rebecca D Combs, Qian Zhang, Luca Pinello

Abstract read
In one paragraph

Article in Frontiers in genetics, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Digital Phenotyping: A Game Changer for the Broiler Industry.Animals : an open access journal from MDPI · 2023
    Review
  6. Article
  7. Article
  8. Extended reality for biomedicine.Nature reviews. Methods primers · 2023
    Article
  9. Article
  10. Article
  11. Bioinformatics and the Metaverse: Are We Ready?Frontiers in bioinformatics · 2022
    Article
  12. Article
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

David F SteinGraduate School of Biomedical Sciences, Icahn School of Medicine at Mount Sinai, New York, NY, United States.
Huidong ChenMolecular Pathology Unit, Massachusetts General Hospital, Charlestown, MA, United States.
Michael E VinyardMolecular Pathology Unit, Massachusetts General Hospital, Charlestown, MA, United States.
Qian QinMolecular Pathology Unit, Massachusetts General Hospital, Charlestown, MA, United States.
Rebecca D CombsCenter for Cancer Research, Massachusetts General Hospital, Charlestown, MA, United States.
Qian ZhangMolecular Pathology Unit, Massachusetts General Hospital, Charlestown, MA, United States.
Luca PinelloMolecular Pathology Unit, Massachusetts General Hospital, Charlestown, MA, United States.

Funding

Multiscale exploration of the functional non-coding genomeR35HG010717 · NHGRI · MASSACHUSETTS GENERAL HOSPITAL · PI PINELLO, LUCA · 2019 to 2023
$2.6M
Determining the role of LSD1 in multiple myeloma through a multi-omics approach at single cell resolutionF31CA257625 · NCI · HARVARD UNIVERSITY · PI VINYARD, MICHAEL EDWARD · 2021 to 2024
$168k
NCI NIH HHS F31 CA257625NHGRI NIH HHS R35 HG010717
6 · The paper itself

Abstract

Single-cell assays have transformed our ability to model heterogeneity within cell populations. As these assays have advanced in their ability to measure various aspects of molecular processes in cells, computational methods to analyze and meaningfully visualize such data have required matched innovation. Independently, Virtual Reality (VR) has recently emerged as a powerful technology to dynamically explore complex data and shows promise for adaptation to challenges in single-cell data visualization. However, adopting VR for single-cell data visualization has thus far been hindered by expensive prerequisite hardware or advanced data preprocessing skills. To address current shortcomings, we present

Indexed as

clusteringdata visualizationscATAC-seqscRNA-seqsingle-celltrajectory inferencevirtual realityVR

Identifiers

PMID34777482
PMCPMC8582280

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.