Evidence map›Paper›PMID 34772993›Full record

ArticleScientific reports2021

The analysis of reference genes expression stability in susceptible and resistant Apera spica-venti populations under herbicide treatment.

Barbara Wrzesińska, Karolina Kościelniak, Patryk Frąckowiak, Tadeusz Praczyk, Aleksandra Obrępalska-Stęplowska

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.5field-weighted citation impact, top 37% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 7 citations in OpenAlex.

  1. Article
  2. Pyroxsulam Resistance inPlants (Basel, Switzerland) · 2024
    Article
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Barbara WrzesińskaDepartment of Molecular Biology and Biotechnology, Institute of Plant Protection - National Research Institute, Władysława Węgorka 20, 60-318, Poznan, Poland.
Karolina KościelniakDepartment of Molecular Biology and Biotechnology, Institute of Plant Protection - National Research Institute, Władysława Węgorka 20, 60-318, Poznan, Poland.
Patryk FrąckowiakDepartment of Molecular Biology and Biotechnology, Institute of Plant Protection - National Research Institute, Władysława Węgorka 20, 60-318, Poznan, Poland.
Tadeusz PraczykDepartment of Weed Science and Plant Protection Techniques, Institute of Plant Protection - National Research Institute, Władysława Węgorka 20, 60-318, Poznan, Poland.
Aleksandra Obrępalska-StęplowskaDepartment of Molecular Biology and Biotechnology, Institute of Plant Protection - National Research Institute, Władysława Węgorka 20, 60-318, Poznan, Poland. ao.steplowska@iorpib.poznan.pl.
Institute of Plant Protection · PL

Funding

Polish National Centre of Research and Development BIOSTRATEG/3/347445/1/NCBR/2017
6 · The paper itself

Abstract

Weed resistance to herbicides constitutes a serious problem to world crop production. One of the weeds that are significantly threatening the crops' yield and quality is Apera spica-venti. The target-site resistance (TSR) mechanism of A. spica-venti has been widely studied, though, little is known about its non-target-site resistance (NTSR) mechanisms at the molecular level. Molecular examination of NTSR is, to a great extent, based on the expression profiles of selected genes, e.g. those participating in detoxification. However, to obtain reliable results of gene expression analysis, the use of a normalizer is required. The aim of this study was to select the best reference genes in A. spica-venti plants of both populations, susceptible and resistant to ALS inhibitor, under treatment with herbicide. Eleven housekeeping genes were chosen for their expression stability assessment. The efficiency correction of raw quantification cycles (Cq) was included in the gene expression stability analyses, which resulted in indicating the TATA-box binding protein (TBP), glyceraldehyde-3-phosphate dehydrogenase, cytosolic (GAPC), and peptidyl-prolyl cis-trans isomerase CYP28 (CYP28) genes as the most stably expressed reference genes. The obtained results are of vital importance for future studies on the expression of genes associated with the non-target-site resistance mechanisms in the A. spica-venti populations susceptible and resistant to herbicides.

Indexed as

Genes, EssentialHerbicide ResistanceHerbicidesPlant WeedsPoaceaePyrimidinesSulfonamidesHerbicidesPyrimidinesSulfonamides

Identifiers

PMID34772993
PMCPMC8589970
OpenAlexW3213494534

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.