Evidence map›Paper›PMID 34771687›Full record

ArticleCancers2021

Risk Prediction for Gastric Cancer Using GWAS-Identifie Polymorphisms,

Naoyo Ishikura, Hidemi Ito, Isao Oze, Yuriko N Koyanagi, Yumiko Kasugai, Yukari Taniyama, Yukino Kawakatsu, Tsutomu Tanaka, Seiji Ito, Masahiro Tajika and 3 more

Abstract read
In one paragraph

Article in Cancers, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Article
  3. Evaluation of polygenic risk score for risk prediction of gastric cancer.World journal of gastrointestinal oncology · 2023
    Review
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Naoyo IshikuraDivision of Cancer Epidemiology and Prevention, Aichi Cancer Center Research Institute, Nagoya 464-8681, Japan.
Hidemi ItoDivision of Cancer Information and Control, Aichi Cancer Center Research Institute, Nagoya 464-8681, Japan.ORCID 0000-0002-8023-4581
Isao OzeDivision of Cancer Epidemiology and Prevention, Aichi Cancer Center Research Institute, Nagoya 464-8681, Japan.ORCID 0000-0002-0762-1147
Yuriko N KoyanagiDivision of Cancer Information and Control, Aichi Cancer Center Research Institute, Nagoya 464-8681, Japan.
Yumiko KasugaiDivision of Cancer Epidemiology and Prevention, Aichi Cancer Center Research Institute, Nagoya 464-8681, Japan.
Yukari TaniyamaDivision of Cancer Information and Control, Aichi Cancer Center Research Institute, Nagoya 464-8681, Japan.
Yukino KawakatsuDivision of Cancer Epidemiology and Prevention, Aichi Cancer Center Research Institute, Nagoya 464-8681, Japan.ORCID 0000-0002-1522-2082
Tsutomu TanakaDepartment of Endoscopy, Aichi Cancer Center Hospital, Nagoya 464-8681, Japan.
Seiji ItoDepartment of Gastrointestinal Surgery, Aichi Cancer Center Hospital, Nagoya 464-8681, Japan.
Masahiro TajikaDepartment of Endoscopy, Aichi Cancer Center Hospital, Nagoya 464-8681, Japan.
Yasuhiro ShimizuDepartment of Endoscopy, Aichi Cancer Center Hospital, Nagoya 464-8681, Japan.
Yasumasa NiwaAichi Cancer Center Hospital, Nagoya 464-8681, Japan.
Keitaro MatsuoDivision of Cancer Epidemiology and Prevention, Aichi Cancer Center Research Institute, Nagoya 464-8681, Japan.ORCID 0000-0003-1761-6314

Funding

Grants-in-Aid for Scientific Research from the Ministry of Education, Science, Sports, Culture and Technology of Japan 17015018Grants-in-Aid for Scientific Research from the Ministry of Education, Science, Sports, Culture and Technology of Japan 221S0001Japan Agency for Medical Research and Development JP20ck0106553Japan Society for the Promotion of Science 15H02524Japan Society for the Promotion of Science 15K08792Japan Society for the Promotion of Science 16H06277Japan Society for the Promotion of Science 18K10037Japan Society for the Promotion of Science 19K10659Japan Society for the Promotion of Science 26253041
6 · The paper itself

Abstract

backgroundAs part of our efforts to develop practical intervention applications for cancer prevention, we investigated a risk prediction model for gastric cancer based on genetic, biological, and lifestyle-related risk factors.

methodsWe conducted two independent age- and sex-matched case-control studies, the first for model derivation (696 cases and 1392 controls) and the second (795 and 795) for external validation. Using the derivation study data, we developed a prediction model by fitting a conditional logistic regression model using the predictors age, ABCD classification defined by

resultsA combination of selected GWAS-identified polymorphisms and the other predictors provided high discriminatory accuracy and good calibration in both the derivation and validation studies, with AUCs of 0.77 (95% confidence intervals: 0.75-0.79) and 0.78 (0.77-0.81), respectively. The calibration plots of both studies stayed close to the ideal calibration line. In the validation study, the environmental model (nongenetic model) was significantly more discriminative than the inclusive model, with an AUC value of 0.80 (0.77-0.82).

conclusionThe contribution of genetic factors to risk prediction was limited, and the ABCD classification (

Indexed as

gastric cancergenetic variantsHelicobacter pylori infectionlifestyle factorsrisk prediction

Identifiers

PMID34771687
PMCPMC8583059

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.