Evidence map›Paper›PMID 34771149›Full record

ArticleMolecules (Basel, Switzerland)2021

Proteomic and Bioinformatic Analysis of Decellularized Pancreatic Extracellular Matrices.

Ming Hu, Huanjing Bi, Deana Moffat, Margaret Blystone, Lillian DeCostanza, Tchilabalo Alayi, Kaiming Ye, Yetrib Hathout, Sha Jin

Open access · goldAbstract read
In one paragraph

Article in Molecules (Basel, Switzerland), 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
2.9field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 19 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Ming HuDepartment of Biomedical Engineering, Thomas J. Watson College of Engineering and Applied Sciences, Binghamton University, Binghamton, NY 13902, USA.
Huanjing BiDepartment of Biomedical Engineering, Thomas J. Watson College of Engineering and Applied Sciences, Binghamton University, Binghamton, NY 13902, USA.
Deana MoffatDepartment of Biomedical Engineering, Thomas J. Watson College of Engineering and Applied Sciences, Binghamton University, Binghamton, NY 13902, USA.
Margaret BlystoneDepartment of Biomedical Engineering, Thomas J. Watson College of Engineering and Applied Sciences, Binghamton University, Binghamton, NY 13902, USA.
Lillian DeCostanzaDepartment of Biomedical Engineering, Thomas J. Watson College of Engineering and Applied Sciences, Binghamton University, Binghamton, NY 13902, USA.
Tchilabalo AlayiDepartment of Pharmaceutical Sciences, School of Pharmacy and Pharmaceutical Sciences, Binghamton University, Binghamton, NY 13902, USA.
Kaiming YeDepartment of Biomedical Engineering, Thomas J. Watson College of Engineering and Applied Sciences, Binghamton University, Binghamton, NY 13902, USA.ORCID 0000-0001-7736-9875
Yetrib HathoutDepartment of Pharmaceutical Sciences, School of Pharmacy and Pharmaceutical Sciences, Binghamton University, Binghamton, NY 13902, USA.
Sha JinDepartment of Biomedical Engineering, Thomas J. Watson College of Engineering and Applied Sciences, Binghamton University, Binghamton, NY 13902, USA.ORCID 0000-0002-8033-8110
Binghamton University · US

Funding

National Science Foundation CBET 1928855
6 · The paper itself

Abstract

Tissue microenvironments are rich in signaling molecules. However, factors in the tissue matrix that can serve as tissue-specific cues for engineering pancreatic tissues have not been thoroughly identified. In this study, we performed a comprehensive proteomic analysis of porcine decellularized pancreatic extracellular matrix (dpECM). By profiling dpECM collected from subjects of different ages and genders, we showed that the detergent-free decellularization method developed in this study permits the preservation of approximately 62.4% more proteins than a detergent-based method. In addition, we demonstrated that dpECM prepared from young pigs contained approximately 68.5% more extracellular matrix proteins than those prepared from adult pigs. Furthermore, we categorized dpECM proteins by biological process, molecular function, and cellular component through gene ontology analysis. Our study results also suggested that the protein composition of dpECM is significantly different between male and female animals while a KEGG enrichment pathway analysis revealed that dpECM protein profiling varies significantly depending on age. This study provides the proteome of pancreatic decellularized ECM in different animal ages and genders, which will help identify the bioactive molecules that are pivotal in creating tissue-specific cues for engineering tissues in vitro.

Indexed as

Computational BiologyProteomicsAnimalsExtracellular MatrixPancreasProteinsSwineTissue EngineeringProteinsage and genderbioinformaticsdecellularizationKEGG pathwaypancreatic extracellular matrix proteinsproteomics

Identifiers

PMID34771149
PMCPMC8588251
OpenAlexW3213801971

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.