Evidence map›Paper›PMID 34770963›Full record

ArticleMolecules (Basel, Switzerland)2021

Size and Structure of Empty and Filled Nanocontainer Based on Peptide Dendrimer with Histidine Spacers at Different pH.

Valeriy V Bezrodnyi, Sofia E Mikhtaniuk, Oleg V Shavykin, Igor M Neelov, Nadezhda N Sheveleva, Denis A Markelov

Open access · goldAbstract read
In one paragraph

Article in Molecules (Basel, Switzerland), 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.7field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 15 citations in OpenAlex.

  1. Article
  2. Molecular Dynamics of Lysine Dendrigrafts in Methanol-Water Mixtures.International journal of molecular sciences · 2023
    Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Valeriy V BezrodnyiSt. Petersburg State University, 7/9 Universitetskaya nab., 199034 St. Petersburg, Russia.ORCID 0000-0003-0204-080X
Sofia E MikhtaniukSt. Petersburg National Research University of Information Technologies, Mechanics and Optics (ITMO University), Kronverkskiy pr. 49, 197101 St. Petersburg, Russia.ORCID 0000-0001-9637-790X
Oleg V ShavykinSt. Petersburg State University, 7/9 Universitetskaya nab., 199034 St. Petersburg, Russia.ORCID 0000-0002-9312-1877
Igor M NeelovSt. Petersburg National Research University of Information Technologies, Mechanics and Optics (ITMO University), Kronverkskiy pr. 49, 197101 St. Petersburg, Russia.ORCID 0000-0002-5930-9892
Nadezhda N ShevelevaSt. Petersburg State University, 7/9 Universitetskaya nab., 199034 St. Petersburg, Russia.ORCID 0000-0001-8452-3092
Denis A MarkelovSt. Petersburg State University, 7/9 Universitetskaya nab., 199034 St. Petersburg, Russia.ORCID 0000-0002-1590-3582
St Petersburg University · RUITMO University · RU

Funding

Russian Science Foundation 19-13-00087
6 · The paper itself

Abstract

Novel peptide dendrimer with Lys-2His repeating units was recently synthesized, studied by NMR (Molecules, 2019, 24, 2481) and tested as a nanocontainer for siRNA delivery (Int. J. Mol. Sci., 2020, 21, 3138). Histidine amino acid residues were inserted in the spacers of this dendrimer. Increase of their charge with a pH decrease turns a surface-charged dendrimer into a volume-charged one and should change all properties. In this paper, the molecular dynamics simulation method was applied to compare the properties of the dendrimer in water with explicit counterions at two different pHs (at normal pH with neutral histidines and at low pH with fully protonated histidines) in a wide interval of temperatures. We obtained that the dendrimer at low pH has essentially larger size and size fluctuations. The electrostatic properties of the dendrimers are different but they are in good agreement with the theoretical soft sphere model and practically do not depend on temperature. We have shown that the effect of pairing of side imidazole groups is much stronger in the dendrimer with neutral histidines than in the dendrimer with protonated histidines. We also demonstrated that the capacity of a nanocontainer based on this dendrimer with protonated histidines is significantly larger than that of a nanocontainer with neutral histidines.

Indexed as

DendrimersHistidineHydrogen-Ion ConcentrationMolecular StructureNanoparticlesParticle SizePeptidesSurface PropertiesDendrimersHistidinePeptideshistidine–histidine pairingmolecular dynamics simulationnanocontainer capacitypeptide dendrimerpH responsive spacers

Identifiers

PMID34770963
PMCPMC8588109
OpenAlexW3209442795

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.