Evidence map›Paper›PMID 34770931›Full record

ArticleMolecules (Basel, Switzerland)2021

Selection and Characterization of Vimentin-Binding Aptamer Motifs for Ovarian Cancer.

Andrea M Costello, Miguel-Angel Elizondo-Riojas, Xin Li, David E Volk, Anil K Pillai, Hongyu Wang

Open access · goldAbstract read
In one paragraph

Article in Molecules (Basel, Switzerland), 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.9field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 16 citations in OpenAlex.

  1. Review
  2. High-affinity ssDNA aptamer and chemiluminescent aptasensor for TIMP-1 detection in human serum.Analytical sciences : the international journal of the Japan Society for Analytical Chemistry · 2025
    Article
  3. Nucleic acid drugs: recent progress and future perspectives.Signal transduction and targeted therapy · 2024
    Review
  4. Nucleic acid drugs: recent progress and future perspectives.Signal transduction and targeted therapy · 2024
    Review
  5. Genetic and phenotypic profiling of single living circulating tumor cells from patients with microfluidics.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  6. Review
  7. Review
  8. Review
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Andrea M CostelloInstitute of Molecular Medicine, McGovern Medical School, University of Texas Health Science Center at Houston, 1825 Hermann Pressler, Houston, TX 77030, USA.
Miguel-Angel Elizondo-RiojasCentro Universitario Contra el Cáncer (CUCC), Servicio de Oncología, Universidad Autónoma de Nuevo León, Hospital Universitario "Dr. José Eleuterio González", Nuevo, León 64460, Mexico.
Xin LiInstitute of Molecular Medicine, McGovern Medical School, University of Texas Health Science Center at Houston, 1825 Hermann Pressler, Houston, TX 77030, USA.
David E VolkInstitute of Molecular Medicine, McGovern Medical School, University of Texas Health Science Center at Houston, 1825 Hermann Pressler, Houston, TX 77030, USA.ORCID 0000-0002-4372-6915
Anil K PillaiDepartment of Radiology, University of Texas Southwestern Medical Center, Dallas, TX 75235, USA.
Hongyu WangInstitute of Molecular Medicine, McGovern Medical School, University of Texas Health Science Center at Houston, 1825 Hermann Pressler, Houston, TX 77030, USA.
The University of Texas Health Science Center at Houston · USThe University of Texas Southwestern Medical Center · USUniversidad Autónoma de Nuevo León · MX

Funding

Center for Clinical and Translational Sciences (CCTS)UL1TR000371 · NCATS · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI MCPHERSON, DAVID D · 2012 to 2016
$13.4M
Texas Center for Cancer NanomedicineU54CA151668 · NCI · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI FERRARI, MAURO · 2010 to 2014
$12.4M
NIH HHS U54 CA151668NIH HHS UL1 TR000371The University of Texas Health Science Center at Houston Department of Diagnostic and Interventional Imaging
6 · The paper itself

Abstract

The application of aptamers in biomedicine is emerging as an essential technology in the field of cancer research. As small single-stranded DNA or RNA ligands with high specificity and low immunogenicity for their targets, aptamers provide many advantages in cancer therapeutics over protein-based molecules, such as antibodies. Vimentin is an intermediate filament protein that is overexpressed in endothelial cells of cancerous tissue. High expression levels of vimentin have been associated with increased capacity for migration and invasion of the tumor cells. We have selected and identified thioated aptamers with high specificity for vimentin using human ovarian cancer tissues. Tentative binding motifs were chosen for two vimentin aptamers based on predicted secondary structures. Each of these shorter, tentative binding motifs was synthesized, purified, and characterized via cell binding assays. Two vimentin binding motifs with high fidelity binding were selected and further characterized via cell and tissue binding assays, as well as flow cytometric analysis. The equilibrium binding constants of these small thioated aptamer constructs were also determined. Future applications for the vimentin binding aptamer motifs include conjugation of the aptamers to synthetic dyes for use in targeted imaging and therapy, and ultimately more detailed and precise monitoring of treatment response and tumor progression in ovarian pathology.

Indexed as

Base SequenceNucleotide MotifsAptamers, NucleotideBinding SitesBiomarkers, TumorFemaleFlow CytometryFluorescent Antibody TechniqueHumansKineticsNucleic Acid ConformationOvarian NeoplasmsProtein BindingSELEX Aptamer TechniqueVimentinAptamers, NucleotideBiomarkers, TumorVimentinaptamerbinding motifsovarian cancer

Identifiers

PMID34770931
PMCPMC8588432
OpenAlexW3211049678

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.