Evidence map›Paper›PMID 34769422›Full record

ArticleInternational journal of molecular sciences2021

Z-DNA as a Tool for Nuclease-Free DNA Methyltransferase Assay.

Sook Ho Kim, Hae Jun Jung, Seok-Cheol Hong

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.3field-weighted citation impact, top 43% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 7 citations in OpenAlex.

  1. Review
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Sook Ho KimCenter for Molecular Spectroscopy and Dynamics, Institute for Basic Science, Seoul 02841, Korea.
Hae Jun JungCenter for Molecular Spectroscopy and Dynamics, Institute for Basic Science, Seoul 02841, Korea.ORCID 0000-0002-0370-2185
Seok-Cheol HongCenter for Molecular Spectroscopy and Dynamics, Institute for Basic Science, Seoul 02841, Korea.
Korea University · KR

Funding

National Research Foundation of Korea 2018K1A4A3A01064272National Research Foundation of Korea NRF-2019R1A2C1089808
6 · The paper itself

Abstract

Methylcytosines in mammalian genomes are the main epigenetic molecular codes that switch off the repertoire of genes in cell-type and cell-stage dependent manners. DNA methyltransferases (DMT) are dedicated to managing the status of cytosine methylation. DNA methylation is not only critical in normal development, but it is also implicated in cancers, degeneration, and senescence. Thus, the chemicals to control DMT have been suggested as anticancer drugs by reprogramming the gene expression profile in malignant cells. Here, we report a new optical technique to characterize the activity of DMT and the effect of inhibitors, utilizing the methylation-sensitive B-Z transition of DNA without bisulfite conversion, methylation-sensing proteins, and polymerase chain reaction amplification. With the high sensitivity of single-molecule FRET, this method detects the event of DNA methylation in a single DNA molecule and circumvents the need for amplification steps, permitting direct interpretation. This method also responds to hemi-methylated DNA. Dispensing with methylation-sensitive nucleases, this method preserves the molecular integrity and methylation state of target molecules. Sparing methylation-sensing nucleases and antibodies helps to avoid errors introduced by the antibody's incomplete specificity or variable activity of nucleases. With this new method, we demonstrated the inhibitory effect of several natural bio-active compounds on DMT. All taken together, our method offers quantitative assays for DMT and DMT-related anticancer drugs.

Indexed as

DNA MethylationDNA, B-FormDNA (Cytosine-5-)-Methyltransferase 1DNA, Z-FormEnzyme AssaysFluorescence Resonance Energy TransferHumansDNA, B-FormDNA (Cytosine-5-)-Methyltransferase 1DNA, Z-FormDNMT1 protein, humanDNA methylationmethylcytosine sensitivenatural DNA methyltransferase inhibitorsnuclease-freesingle-molecule FRETZ-DNA

Identifiers

PMID34769422
PMCPMC8585049
OpenAlexW3211456622

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.