Evidence map›Paper›PMID 34769056›Full record

ArticleInternational journal of molecular sciences2021

A Collection of Designed Peptides to Target SARS-CoV-2 Spike RBD-ACE2 Interaction.

Narcis Fernandez-Fuentes, Ruben Molina, Baldo Oliva

Abstract read
In one paragraph

Article in International journal of molecular sciences, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Article
  2. Bioactive Peptides in Human Health and Disease.International journal of molecular sciences · 2023
    Article
  3. Applying the digital data and the bioinformatics tools in SARS-CoV-2 research.Computational and structural biotechnology journal · 2023
    Review
  4. Article
  5. Article
  6. Article
  7. Review
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Narcis Fernandez-FuentesInstitute of Biological, Environmental and Rural Science, Aberystwyth University, Aberystwyth SY233EB, UK.
Ruben MolinaStructural Bioinformatics Lab, Department of Experimental and Health Sciences, University Pompeu Fabra, 08003 Barcelona, Spain.
Baldo OlivaStructural Bioinformatics Lab, Department of Experimental and Health Sciences, University Pompeu Fabra, 08003 Barcelona, Spain.

Funding

Ser Cymru III WG#9
6 · The paper itself

Abstract

The angiotensin-converting enzyme 2 (ACE2) is the receptor used by SARS-CoV and SARS-CoV-2 coronaviruses to attach to cells via the receptor-binding domain (RBD) of their viral spike protein. Since the start of the COVID-19 pandemic, several structures of protein complexes involving ACE2 and RBD as well as monoclonal antibodies and nanobodies have become available. We have leveraged the structural data to design peptides to target the interaction between the RBD of SARS-CoV-2 and ACE2 and SARS-CoV and ACE2, as contrasting exemplar, as well as the dimerization surface of ACE2 monomers. The peptides were modelled using our original method: PiPreD that uses native elements of the interaction between the targeted protein and cognate partner(s) that are subsequently included in the designed peptides. These peptides recapitulate stretches of residues present in the native interface plus novel and highly diverse conformations surrogating key interactions at the interface. To facilitate the access to this information we have created a freely available and dedicated web-based repository, Pep

Indexed as

Angiotensin-Converting Enzyme 2Binding SitesDatabases, FactualHost-Pathogen InteractionsHumansModels, MolecularPeptide LibraryPeptidesProtein ConformationProtein DomainsProtein EngineeringSARS-CoV-2Spike Glycoprotein, CoronavirusACE2 protein, humanAngiotensin-Converting Enzyme 2Peptide LibraryPeptidesSpike Glycoprotein, Coronavirusspike protein, SARS-CoV-2ACE2databasespeptide designprotein–protein interactionsSARS-CoV-2

Identifiers

PMID34769056
PMCPMC8584250

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.