Evidence map›Paper›PMID 34768773›Full record

ArticleInternational journal of molecular sciences2021

Systematic Analysis of FASTK Gene Family Alterations in Cancer.

Lorena Magraner-Pardo, Dino Gobelli, Miguel A de la Fuente, Tirso Pons, María Simarro

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.4field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 12 citations in OpenAlex.

  1. Article
  2. Review
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  4. Article
  5. Article
  6. How RNases Shape Mitochondrial Transcriptomes.International journal of molecular sciences · 2022
    Review
  7. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Lorena Magraner-PardoProstate Cancer Clinical Research Unit, Spanish National Cancer Research Center (CNIO), 28029 Madrid, Spain.
Dino GobelliDepartment of Cell Biology, Histology and Pharmacology, University of Valladolid, 47005 Valladolid, Spain.
Miguel A de la FuenteDepartment of Cell Biology, Histology and Pharmacology, University of Valladolid, 47005 Valladolid, Spain.
Tirso PonsDepartment of Immunology and Oncology, National Center for Biotechnology (CNB-CSIC), Spanish National Research Council, 28049 Madrid, Spain.ORCID 0000-0002-7616-7750
María SimarroUnit of Excellence, Institute of Biology and Molecular Genetics, University of Valladolid and CSIC, 47003 Valladolid, Spain.
Universidad de Valladolid · ESConsejo Superior de Investigaciones Científicas · ESSpanish National Cancer Research Centre · ES

Funding

Consejería de Sanidad, Junta de Castilla y León; Consejería de Educación, Junta de Castilla y León; Ministerio de Ciencia e Innovación; EMBO GRS 1971/A/19 and GRS 2201/A/2020 (Consejería de Sanidad, Junta de Castilla y León); Grant VA172P20 (Consejería de Educación, Junta de Castilla y León); Severo Ochoa SVP-2014-068895 (Ministerio de Ciencia e Innovación); short-term fellowship 8374 (EMBO)
6 · The paper itself

Abstract

The FASTK family of proteins have been recently reported to play a key role in the post-transcriptional regulation of mitochondrial gene expression, including mRNA stability and translation. Accumulated studies have provided evidence that the expression of some FASTK genes is altered in certain types of cancer, in agreement with the central role of mitochondria in cancer development. Here, we obtained a pan-cancer overview of the genomic and transcriptomic alterations of FASTK genes. FASTK, FASTKD1, FASTKD3 and FASTKD5 showed the highest rates of genetic alterations. FASTK and FASTKD3 alterations consisted mainly of amplifications that were seen in more than 8% of ovarian and lung cancers, respectively. FASTKD1 and FASTKD5 were the most frequently mutated FASTK genes, and the mutations were identified in 5-7% of uterine cancers, as well as in 4% of melanomas. Our results also showed that the mRNA levels of all FASTK members were strongly upregulated in esophageal, stomach, liver and lung cancers. Finally, the protein-protein interaction network for FASTK proteins uncovers the interaction of FASTK, FASTKD2, FASTKD4 and FASTKD5 with cancer signaling pathways. These results serve as a starting point for future research into the potential of the FASTK family members as diagnostic and therapeutic targets for certain types of cancer.

Indexed as

Databases, GeneticGene Expression Regulation, NeoplasticHumansMitochondriaMutationNeoplasmsProtein Interaction MapsProtein Serine-Threonine KinasesRNA, MessengerSignal TransductionTranscriptomeFASTK protein, humanProtein Serine-Threonine KinasesRNA, MessengercancerFASTKgenetic alterationsmitochondria

Identifiers

PMID34768773
PMCPMC8583194
OpenAlexW3207265153

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.