Evidence map›Paper›PMID 34767147›Full record

ArticlePlant molecular biology2022

Suppressed expression of starch branching enzyme 1 and 2 increases resistant starch and amylose content and modifies amylopectin structure in cassava.

Yoshinori Utsumi, Chikako Utsumi, Maho Tanaka, Satoshi Takahashi, Yoshie Okamoto, Masami Ono, Yasunori Nakamura, Motoaki Seki

Abstract read
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In one paragraph

Article in Plant molecular biology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
2.0field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 27 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. The Structure of Maltooctaose-BoundMolecules (Basel, Switzerland) · 2023
    Article
  5. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Yoshinori UtsumiPlant Genomic Network Research Team, RIKEN Center for Sustainable Resource Science, 1-7- 22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa, 230-0045, Japan. yoshinori.utsumi@riken.jp.ORCID http://orcid.org/0000-0002-9196-7123
Chikako UtsumiPlant Genomic Network Research Team, RIKEN Center for Sustainable Resource Science, 1-7- 22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa, 230-0045, Japan.
Maho TanakaPlant Genomic Network Research Team, RIKEN Center for Sustainable Resource Science, 1-7- 22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa, 230-0045, Japan.
Satoshi TakahashiPlant Genomic Network Research Team, RIKEN Center for Sustainable Resource Science, 1-7- 22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa, 230-0045, Japan.
Yoshie OkamotoPlant Genomic Network Research Team, RIKEN Center for Sustainable Resource Science, 1-7- 22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa, 230-0045, Japan.
Masami OnoFaculty of Bioresource Sciences, Akita Prefectural University, 241-438 Kaidobata-nishi, Shimoshinjo-Nakano, Akita, 010-0195, Japan.
Yasunori NakamuraFaculty of Bioresource Sciences, Akita Prefectural University, 241-438 Kaidobata-nishi, Shimoshinjo-Nakano, Akita, 010-0195, Japan.
Motoaki SekiPlant Genomic Network Research Team, RIKEN Center for Sustainable Resource Science, 1-7- 22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa, 230-0045, Japan. motoaki.seki@riken.jp.
RIKEN Center for Sustainable Resource Science · JPAkita Prefectural University · JPKihara Institute for Biological Research · JP

Funding

strategic international collaborative research program JPMJSC16C4
6 · The paper itself

Abstract

key messageSuppression of starch branching enzymes 1 and 2 in cassava leads to increased resistant starch content through the production of high-amylose and modification of the amylopectin structure. Cassava (Manihot esculenta Crantz) is a starchy root crop used for human consumption as a staple food and industrial applications. Starch is synthesized by various isoforms of several enzymes. However, the function of starch branching enzymes (SBEs) in starch biosynthesis and mechanisms of starch regulation in cassava have not been understood well. In this study, we aimed to suppress the expression of SBEs in cassava to generate starches with a range of distinct properties, in addition to verifying the functional characteristics of the SBEs. One SBE1, two SBE2, and one SBE3 genes were classified by phylogenetic analysis and amino acid alignment. Quantitative real-time RT-PCR revealed tissue-specific expression of SBE genes in the tuberous roots and leaves of cassava. We introduced RNAi constructs containing fragments of SBE1, SBE2, or both genes into cassava by Agrobacterium-mediated transformation, and assessed enzymatic activity of SBE using tuberous roots and leaves from these transgenic plants. Simultaneous suppression of SBE1 and SBE2 rendered an extreme starch phenotype compared to suppression of SBE2 alone. Degree of polymerization of 6-13 chains in amylopectin was markedly reduced by suppression of both SBE1 and SBE2 in comparison to the SBE2 suppression; however, no change in chain-length profiles was observed in the SBE1 suppression alone. The role of SBE1 and SBE2 may have functional overlap in the storage tissue of cassava. Simultaneous suppression of SBE1 and SBE2 resulted in highly resistant starch with increased apparent amylose content compared to suppression of SBE2 alone. This study provides valuable information for understanding starch biosynthesis and suggests targets for altering starch quality.

Indexed as

1,4-alpha-Glucan Branching EnzymeAmylopectinAmyloseCarbohydrate ConformationGenome, PlantManihotPlants, Genetically ModifiedResistant StarchStarchTranscriptome1,4-alpha-Glucan Branching EnzymeAmylopectinAmyloseResistant StarchStarchAmylopectinCassavaHigh-amylose starchStarch branching enzyme

Identifiers

PMID34767147
OpenAlexW3213327407

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.