Evidence map›Paper›PMID 34766068›Full record

ArticleThe Lancet. Microbe2021

Potential contribution of HIV during first-line tuberculosis treatment to subsequent rifampicin-monoresistant tuberculosis and acquired tuberculosis drug resistance in South Africa: a retrospective molecular epidemiology study.

Helen Cox, Zubeida Salaam-Dreyer, Galo A Goig, Mark P Nicol, Fabrizio Menardo, Anzaan Dippenaar, Erika Mohr-Holland, Johnny Daniels, Patrick G T Cudahy, Sonia Borrell and 7 more

Open access · goldAbstract read
In one paragraph

Article in The Lancet. Microbe, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed, 1 pooled it
1.1field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 1 synthesis or guideline pooled it, 22 citations in OpenAlex.

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  6. Epidemiologic and clinical characteristics ofFrontiers in cellular and infection microbiology · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 9 institutions in 5 countries.

Helen CoxDivision of Medical Microbiology, Department of Pathology, University of Cape Town, Cape Town, South Africa.
Zubeida Salaam-DreyerDivision of Medical Microbiology, Department of Pathology, University of Cape Town, Cape Town, South Africa.
Galo A GoigSwiss Tropical and Public Health Institute, Basel, Switzerland.
Mark P NicolDivision of Infection and Immunity, School of Biomedical Sciences, University of Western Australia, Perth, WA, Australia.
Fabrizio MenardoSwiss Tropical and Public Health Institute, Basel, Switzerland.
Anzaan DippenaarTuberculosis Omics Research Consortium, Family Medicine and Population Health, Institute of Global Health, Faculty of Medicine and Health Sciences, University of Antwerp, Antwerp, Belgium.
Erika Mohr-HollandMédecins Sans Frontières, Khayelitsha, Cape Town, South Africa.
Johnny DanielsMédecins Sans Frontières, Khayelitsha, Cape Town, South Africa.
Patrick G T CudahySection of Infectious Diseases, Department of Internal Medicine, Yale School of Medicine, New Haven, CT, USA.
Sonia BorrellSwiss Tropical and Public Health Institute, Basel, Switzerland.
Miriam ReinhardSwiss Tropical and Public Health Institute, Basel, Switzerland.
Anna DoetschSwiss Tropical and Public Health Institute, Basel, Switzerland.
Christian BeiselUniversity of Basel, Basel, Switzerland.
Anja ReuterMédecins Sans Frontières, Khayelitsha, Cape Town, South Africa.
Jennifer FurinDepartment of Global Health and Social Medicine, Harvard Medical School, Boston, MA, USA.
Sebastien GagneuxSwiss Tropical and Public Health Institute, Basel, Switzerland.
Robin M WarrenDST-NRF Centre of Excellence for Biomedical Tuberculosis Research/SAMRC Centre for Tuberculosis Research, Division of Molecular Biology and Human Genetics, Faculty of Medicine and Health Sciences, Stellenbosch University, Stellenbosch, South Africa.
Swiss Tropical and Public Health Institute · CHMédecins Sans Frontières · ZAUniversity of Basel · CHUniversity of Cape Town · ZAHarvard University · USStellenbosch University · ZAUniversity of Antwerp · BEUniversity of Western Australia · AUYale University · US

Funding

Yale Clinical and Translational Science Award (U Component)UL1TR001863 · NCATS · YALE UNIVERSITY · PI John H. Krystal, LUCILA OHNO-MACHADO · 2016 to 2026
$102.9M
Multidrug-resistant tuberculosis and HIV: Composition of Strains and biomarkers of treatment responseK01TW011194 · FIC · YALE UNIVERSITY · PI CUDAHY, PATRICK GEORGE TOBIAS · 2019 to 2023
$826k
FIC NIH HHS K01 TW011194NCATS NIH HHS UL1 TR001863Wellcome Trust 099818/Z/12/Z
6 · The paper itself

Abstract

backgroundSouth Africa has a high burden of rifampicin-resistant tuberculosis (including multidrug-resistant [MDR] tuberculosis), with increasing rifampicin-monoresistant (RMR) tuberculosis over time. Resistance acquisition during first-line tuberculosis treatment could be a key contributor to this burden, and HIV might increase the risk of acquiring rifampicin resistance. We assessed whether HIV during previous treatment was associated with RMR tuberculosis and resistance acquisition among a retrospective cohort of patients with MDR or rifampicin-resistant tuberculosis.

methodsIn this retrospective cohort study, we included all patients routinely diagnosed with MDR or rifampicin-resistant tuberculosis in Khayelitsha, Cape Town, South Africa, between Jan 1, 2008, and Dec 31, 2017. Patient-level data were obtained from a prospective database, complemented by data on previous tuberculosis treatment and HIV from a provincial health data exchange. Stored MDR or rifampicin-resistant tuberculosis isolates from patients underwent whole-genome sequencing (WGS). WGS data were used to infer resistance acquisition versus transmission, by identifying genomically unique isolates (single nucleotide polymorphism threshold of five). Logistic regression analyses were used to assess factors associated with RMR tuberculosis and genomic uniqueness.

findingsThe cohort included 2041 patients diagnosed with MDR or rifampicin-resistant tuberculosis between Jan 1, 2008, and Dec 31, 2017; of those, 463 (22·7%) with RMR tuberculosis and 1354 (66·3%) with previous tuberculosis treatment. In previously treated patients, HIV positivity during previous tuberculosis treatment versus HIV negativity (adjusted odds ratio [OR] 2·07, 95% CI 1·35-3·18), and three or more previous tuberculosis treatment episodes versus one (1·96, 1·21-3·17) were associated with RMR tuberculosis. WGS data showing MDR or rifampicin-resistant tuberculosis were available for 1169 patients; 360 (30·8%) isolates were identified as unique. In previously treated patients, RMR tuberculosis versus MDR tuberculosis (adjusted OR 4·96, 3·40-7·23), HIV positivity during previous tuberculosis treatment (1·71, 1·03-2·84), and diagnosis in 2013-17 (1·42, 1·02-1·99) versus 2008-12, were associated with uniqueness. In previously treated patients with RMR tuberculosis, HIV positivity during previous treatment (adjusted OR 5·13, 1·61-16·32) was associated with uniqueness as was female sex (2·50 [1·18-5·26]).

interpretationThese data suggest that HIV contributes to rifampicin-resistance acquisition during first-line tuberculosis treatment and that this might be driving increasing RMR tuberculosis over time. Large-scale prospective cohort studies are required to further quantify this risk.

fundingSwiss National Science Foundation, South African National Research Foundation, and Wellcome Trust.

Indexed as

HIV InfectionsMycobacterium tuberculosisTuberculosisTuberculosis, Multidrug-ResistantDrug ResistanceFemaleHumansMolecular EpidemiologyRetrospective StudiesRifampinSouth AfricaRifampin

Identifiers

PMID34766068
PMCPMC8563432
OpenAlexW3192317627

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.