Evidence map›Paper›PMID 34764960›Full record

ArticleFrontiers in immunology2021

Cross-Reactivity to Mutated Viral Immune Targets Can Influence CD8

Jennifer Currenti, Becker M P Law, Kai Qin, Mina John, Mark A Pilkinton, Anju Bansal, Shay Leary, Ramesh Ram, Abha Chopra, Rama Gangula and 11 more

Open access · goldAbstract read
In one paragraph

Article in Frontiers in immunology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
0.9field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 10 citations in OpenAlex.

  1. Trial
  2. Article
  3. Review
  4. Advances in Single-Cell Sequencing for Infectious Diseases: Progress and Perspectives.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2025
    Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors at 5 institutions in 2 countries.

Jennifer CurrentiSchool of Human Sciences, University of Western Australia, Crawley, WA, Australia.
Becker M P LawSchool of Human Sciences, University of Western Australia, Crawley, WA, Australia.
Kai QinDepartment of Medicine, University of Alabama at Birmingham, Birmingham, AL, United States.
Mina JohnInstitute for Immunology and Infectious Diseases, Murdoch University, Murdoch, WA, Australia.
Mark A PilkintonDivision of Infectious Diseases, Department of Medicine, Vanderbilt University Medical Center, Nashville, TN, United States.
Anju BansalDepartment of Medicine, University of Alabama at Birmingham, Birmingham, AL, United States.
Shay LearyInstitute for Immunology and Infectious Diseases, Murdoch University, Murdoch, WA, Australia.
Ramesh RamInstitute for Immunology and Infectious Diseases, Murdoch University, Murdoch, WA, Australia.
Abha ChopraInstitute for Immunology and Infectious Diseases, Murdoch University, Murdoch, WA, Australia.
Rama GangulaDivision of Infectious Diseases, Department of Medicine, Vanderbilt University Medical Center, Nashville, TN, United States.
Ling YueEmory Vaccine Center at Yerkes National Primate Research Center, Emory University, Atlanta, GA, United States.
Christian WarrenDivision of Infectious Diseases, Department of Medicine, Vanderbilt University Medical Center, Nashville, TN, United States.
Louise BarnettDivision of Infectious Diseases, Department of Medicine, Vanderbilt University Medical Center, Nashville, TN, United States.
Eric AlvesSchool of Human Sciences, University of Western Australia, Crawley, WA, Australia.
Wyatt J McDonnellDivision of Infectious Diseases, Department of Medicine, Vanderbilt University Medical Center, Nashville, TN, United States.
Anuradha SoodaInstitute for Immunology and Infectious Diseases, Murdoch University, Murdoch, WA, Australia.
Sonya L HeathDepartment of Medicine, University of Alabama at Birmingham, Birmingham, AL, United States.
Simon MallalInstitute for Immunology and Infectious Diseases, Murdoch University, Murdoch, WA, Australia.
Paul GoepfertDepartment of Medicine, University of Alabama at Birmingham, Birmingham, AL, United States.
Spyros A KalamsDivision of Infectious Diseases, Department of Medicine, Vanderbilt University Medical Center, Nashville, TN, United States.
Silvana GaudieriSchool of Human Sciences, University of Western Australia, Crawley, WA, Australia.
Vanderbilt University Medical Center · USMurdoch University · AUUniversity of Alabama at Birmingham · USUniversity of Western Australia · AUEmory University · US

Funding

Unsolicited R24 for the CFAR-Network of Integrated Clinical Sciences, CNICSR24AI067039 · NIAID · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI Michael S. Saag · 2006 to 2026
$99.4M
Virology CoreP30AI027767 · NIAID · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI Latesha Ellen Elopre · 1988 to 2026
$84.1M
Tennessee CFAR: Implementation of Culturally Responsive Trauma-Informed Care with Youth with HIV in Memphis, TNP30AI110527 · NIAID · VANDERBILT UNIVERSITY MEDICAL CENTER · PI Stephany Norah Duda · 2015 to 2026
$27.5M
CTL and HIV Polymorphisms in Heterosexual TransmissionR01AI064060 · NIAID · EMORY UNIVERSITY · PI GOEPFERT, PAUL A., HUNTER, ERIC · 2005 to 2019
$21.7M
A Rational Approach for HIV Vaccine T Cell Epitope SelectionR01AI112566 · NIAID · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI GOEPFERT, PAUL A. · 2014 to 2017
$1.9M
The impact of HIV adaptation to CD8 T cells on infection and viral controlR56AI143482 · NIAID · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI GOEPFERT, PAUL A. · 2020 to 2020
$662k
NIAID NIH HHS P30 AI027767NIAID NIH HHS P30 AI110527NIAID NIH HHS R01 AI064060NIAID NIH HHS R01 AI112566NIAID NIH HHS R24 AI067039NIAID NIH HHS R56 AI143482
6 · The paper itself

Abstract

Loss of T cell immunogenicity due to mutations in virally encoded epitopes is a well-described adaptation strategy to limit host anti-viral immunity. Another described, but less understood, adaptation strategy involves the selection of mutations within epitopes that retain immune recognition, suggesting a benefit for the virus despite continued immune pressure (termed non-classical adaptation). To understand this adaptation strategy, we utilized a single cell transcriptomic approach to identify features of the HIV-specific CD8

Indexed as

Adaptation, PhysiologicalAdultCD8-Positive T-LymphocytesCross ReactionsEpitopes, T-LymphocyteFemaleHIVHIV InfectionsHumansMaleMiddle AgedEpitopes, T-LymphocyteadaptationHIVhost-viral interactionsT cell receptortranscriptome

Identifiers

PMID34764960
PMCPMC8577586
OpenAlexW3208231963

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.