Evidence map›Paper›PMID 34764387›Full record

ArticleScientific reports2021

Transcriptome based identification and validation of heat stress transcription factors in wheat progenitor species Aegilops speltoides.

Sushmita Seni, Satinder Kaur, Palvi Malik, Inderjit Singh Yadav, Parul Sirohi, Harsh Chauhan, Amandeep Kaur, Parveen Chhuneja

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.1field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 23 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Sushmita SeniSchool of Agricultural Biotechnology, Punjab Agricultural University, Ludhiana, Punjab, 141004, India.
Satinder KaurSchool of Agricultural Biotechnology, Punjab Agricultural University, Ludhiana, Punjab, 141004, India. satinder.biotech@pau.edu.ORCID http://orcid.org/0000-0003-3704-3074
Palvi MalikSchool of Agricultural Biotechnology, Punjab Agricultural University, Ludhiana, Punjab, 141004, India.ORCID http://orcid.org/0000-0003-1215-7120
Inderjit Singh YadavSchool of Agricultural Biotechnology, Punjab Agricultural University, Ludhiana, Punjab, 141004, India.
Parul SirohiDepartment of Biosciences and Bioengineering, Indian Institute of Technology Roorkee, Roorkee, Uttarakhand, 247667, India.
Harsh ChauhanDepartment of Biosciences and Bioengineering, Indian Institute of Technology Roorkee, Roorkee, Uttarakhand, 247667, India.
Amandeep KaurSchool of Agricultural Biotechnology, Punjab Agricultural University, Ludhiana, Punjab, 141004, India.ORCID http://orcid.org/0000-0002-9140-3424
Parveen ChhunejaSchool of Agricultural Biotechnology, Punjab Agricultural University, Ludhiana, Punjab, 141004, India.ORCID http://orcid.org/0000-0002-8599-9479
Punjab Agricultural University · INIndian Institute of Technology Roorkee · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Wheat, one of the major cereal crops worldwide, get adversely affected by rising global temperature. We have identified the diploid B genome progenitor of wheat, Aegilops speltoides (SS), as a potential donor for heat stress tolerance. Therefore, the present work was planned to study the total transcriptome profile of heat stress-tolerant Ae. speltoides accession pau3809 (AS3809) and compare with that of tetraploid and hexaploid wheat cultivars PDW274 and PBW725, respectively. The comparative transcriptome was utilized to identify and validate heat stress transcription factors (HSFs), the key genes involved in imparting heat stress tolerance. Transcriptome analysis led to the identification of a total of 74 K, 68 K, and 76 K genes in AS3809, PDW274, and PBW725, respectively. There was a high uniformity of GO profiles under the biological, molecular, and cellular functions across the three wheat transcriptomes, suggesting the conservation of gene function. Twelve HSFs having the highest FPKM value were identified in the AS3809 transcriptome data, while six of these HSFs namely HSFA3, HSFA5, HSFA9, HSFB2a, HSFB2b, and HSFC1b, were validated with qRT PCR. These six HSFs were identified as an important component of thermotolerance in AS3809 as evident from their comparative higher expression under heat stress.

Indexed as

Gene Expression Regulation, PlantTranscriptomeAegilopsGenome, PlantHeat-Shock ResponsePlant ProteinsTranscription FactorsTriticumPlant ProteinsTranscription Factors

Identifiers

PMID34764387
PMCPMC8586331
OpenAlexW3190806170

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.