Evidence map›Paper›PMID 34764366›Full record

ArticleScientific reports2021

Detection of blueberry stunt phytoplasma in Eastern Canada using cpn60-based molecular diagnostic assays.

Christine Hammond, Edel Pérez-López, Jennifer Town, Charles Vincent, Debra Moreau, Tim Dumonceaux

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
1.3field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 10 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Christine HammondAgriculture and Agri-Food Canada, Saskatoon, SK, Canada.
Edel Pérez-LópezDépartement de Phytologie, Université Laval, Faculté des Sciences de l'Agriculture et de l'Alimentation, Québec, QC, Canada.
Jennifer TownAgriculture and Agri-Food Canada, Saskatoon, SK, Canada.
Charles VincentAgriculture and Agri-Food Canada, Saint-Jean-sur-Richelieu, QC, Canada.
Debra MoreauAgriculture and Agri-Food Canada, Kentville, NS, Canada.
Tim DumonceauxAgriculture and Agri-Food Canada, Saskatoon, SK, Canada. tim.dumonceaux@agr.gc.ca.
Agriculture and Agri-Food Canada · CAUniversité Laval · CA

Funding

Agriculture and Agri-Food canada A-base Project 1668-Sustainable small fruit production
6 · The paper itself

Abstract

Blueberry stunt phytoplasma (BBSP; 'Candidatus Phytoplasma asteris') is an insect-vectored plant pathogen that causes severe yield losses in blueberry (Vaccinium corymbosum), which is the most valuable fruit crop in Canada. Rapid, field-based diagnostic assays are desirable tools for the control of BBSP, as part of an integrated, proactive approach to production management termed biovigilance. We designed and validated a chaperonin-60 (cpn60)-targeted LAMP assay for detection of BBSP, providing a rapid, low cost, field-deployable diagnostic option. Our validation demonstrates that the assay is reproducible, with high analytical specificity and improved sensitivity when compared with 16S rRNA nested PCR. We applied the validated LAMP assay to nearly 2000 blueberry samples from Québec and Nova Scotia over three growing seasons (2016-2018). Our surveys revealed that BBSP is present in most sites across both provinces, though detection of the pathogen in individual plants varied in different tissues across sampling dates and across years, and evidence of spread between plants was limited. To quantify pathogen load in select plants, we designed additional qPCR and ddPCR assays, also based on cpn60. We found that pathogen load fluctuates in individual plants, both within and between growing seasons. Finally, we designed an interactive map to visualize the results of our surveys. These results provide a validated diagnostic assay that can be used as part of a biovigilance strategy for detecting and controlling infections caused by BBSP.

Indexed as

Blueberry PlantsChaperonin 60DNA, BacterialMolecular Diagnostic TechniquesNova ScotiaNucleic Acid Amplification TechniquesPathology, MolecularPhylogenyPhytoplasmaPlant DiseasesQuebecReal-Time Polymerase Chain ReactionRNA, Ribosomal, 16SChaperonin 60DNA, BacterialRNA, Ribosomal, 16S

Identifiers

PMID34764366
PMCPMC8586236
OpenAlexW3214039562

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.