Evidence map›Paper›PMID 34764280›Full record

ArticleNature communications2021

Cryo-EM structure provides insights into the dimer arrangement of the O-linked β-N-acetylglucosamine transferase OGT.

Richard W Meek, James N Blaza, Jil A Busmann, Matthew G Alteen, David J Vocadlo, Gideon J Davies

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
2.4field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 39 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. HumanResearch square · 2025
    Article
  8. Review
  9. Article
  10. Article
  11. Insights into O-GlcNAcylation and programmed cell death in cancer.Frontiers in cell and developmental biology · 2025
    Review
  12. Identification of a Polypeptide Inhibitor ofJournal of the American Chemical Society · 2024
    Article
  13. Review
  14. Dissecting OGT's TPR domain to identify determinants of cellular function.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  15. Article
  16. Article
  17. Phage display uncovers a sequence motif that drives polypeptide binding to a conserved regulatory exosite of O-GlcNAc transferase.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  18. Article
  19. Monomer and dimer structures of cytochrome boProtein science : a publication of the Protein Society · 2023
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Richard W MeekYork Structural Biology Laboratory, Department of Chemistry, University of York, York, YO10 5DD, UK.ORCID 0000-0002-1370-0896
James N BlazaYork Structural Biology Laboratory, Department of Chemistry, University of York, York, YO10 5DD, UK. jamie.blaza@york.ac.uk.ORCID 0000-0001-5420-2116
Jil A BusmannDepartment of Molecular Biology and Biochemistry, Simon Fraser University, 8888 University Drive, Burnaby, BC, V5A 1S6, Canada.
Matthew G AlteenDepartment of Chemistry, Simon Fraser University, 8888 University Drive, Burnaby, BC, V5A 1S6, Canada.ORCID 0000-0002-9639-7668
David J VocadloDepartment of Molecular Biology and Biochemistry, Simon Fraser University, 8888 University Drive, Burnaby, BC, V5A 1S6, Canada.ORCID 0000-0001-6897-5558
Gideon J DaviesYork Structural Biology Laboratory, Department of Chemistry, University of York, York, YO10 5DD, UK. gideon.davies@york.ac.uk.ORCID 0000-0002-7343-776X
Simon Fraser University · CAUniversity of York · GB

Funding

Biotechnology and Biological Sciences Research CouncilMedical Research Council MR/T040742/1Wellcome Trust
6 · The paper itself

Abstract

The O-linked β-N-acetylglucosamine modification is a core signalling mechanism, with erroneous patterns leading to cancer and neurodegeneration. Although thousands of proteins are subject to this modification, only a single essential glycosyltransferase catalyses its installation, the O-GlcNAc transferase, OGT. Previous studies have provided truncated structures of OGT through X-ray crystallography, but the full-length protein has never been observed. Here, we report a 5.3 Å cryo-EM model of OGT. We show OGT is a dimer, providing a structural basis for how some X-linked intellectual disability mutations at the interface may contribute to disease. We observe that the catalytic section of OGT abuts a 13.5 tetratricopeptide repeat unit region and find the relative positioning of these sections deviate from the previously proposed, X-ray crystallography-based model. We also note that OGT exhibits considerable heterogeneity in tetratricopeptide repeat units N-terminal to the dimer interface with repercussions for how OGT binds protein ligands and partners.

Indexed as

Amino AcidsChromiumCryoelectron MicroscopyCrystallography, X-RayGlycomicsMutationNicotinic AcidsProtein Structure, SecondaryAmino AcidsChromiumglucose tolerance factorNicotinic Acids

Identifiers

PMID34764280
PMCPMC8586251
OpenAlexW3211889529

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.