Evidence map›Paper›PMID 34764225›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2021

The A39G FF domain folds on a volcano-shaped free energy surface via separate pathways.

Ved P Tiwari, Yuki Toyama, Debajyoti De, Lewis E Kay, Pramodh Vallurupalli

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.6field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 26 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Article
  5. Article
  6. Mapping the FF domain folding pathway via structures of transiently populated folding intermediates.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  7. Article
  8. Probing excited stateMethods (San Diego, Calif.) · 2023
    Article
  9. Article
  10. Angewandte Chemie (Weinheim an der Bergstrasse, Germany) · 2023
    Article
  11. Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Ved P TiwariTata Institute of Fundamental Research, Hyderabad 500107, India.ORCID 0000-0003-2738-0376
Yuki ToyamaDepartment of Biochemistry, University of Toronto, ON M5S 1A8, Canada.ORCID 0000-0003-0457-678X
Debajyoti DeTata Institute of Fundamental Research, Hyderabad 500107, India.ORCID 0000-0002-9121-8210
Lewis E KayDepartment of Biochemistry, University of Toronto, ON M5S 1A8, Canada; kay@pound.med.utoronto.ca pramodh@tifrh.res.in.
Pramodh VallurupalliTata Institute of Fundamental Research, Hyderabad 500107, India; kay@pound.med.utoronto.ca pramodh@tifrh.res.in.ORCID 0000-0002-0936-6098
Tata Institute of Fundamental Research · INUniversity of Toronto · CA

Funding

CIHR
6 · The paper itself

Abstract

Conformational dynamics play critical roles in protein folding, misfolding, function, misfunction, and aggregation. While detecting and studying the different conformational states populated by protein molecules on their free energy surfaces (FESs) remain a challenge, NMR spectroscopy has emerged as an invaluable experimental tool to explore the FES of a protein, as conformational dynamics can be probed at atomic resolution over a wide range of timescales. Here, we use chemical exchange saturation transfer (CEST) to detect "invisible" minor states on the energy landscape of the A39G mutant FF domain that exhibited "two-state" folding kinetics in traditional experiments. Although CEST has mostly been limited to studies of processes with rates between ∼5 to 300 s

Indexed as

EntropyKineticsNuclear Magnetic Resonance, BiomolecularProtein DomainsProtein FoldingProteinsProteinschemical exchange saturation transfer NMRFF domainmultiple folding pathwaysmultistate exchangeprotein folding intermediates

Identifiers

PMID34764225
PMCPMC8609552
OpenAlexW3212747460

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.