Evidence map›Paper›PMID 34762398›Full record

ArticleBiochemistry2021

The Crystal Structure of Cysteamine Dioxygenase Reveals the Origin of the Large Substrate Scope of This Vital Mammalian Enzyme.

Rebeca L Fernandez, Laura D Elmendorf, Robert W Smith, Craig A Bingman, Brian G Fox, Thomas C Brunold

Open access · greenAbstract read
In one paragraph

Article in Biochemistry, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.7field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 25 citations in OpenAlex.

  1. Article
  2. Oxygen sensing and plant adaptation to flooding in a changing climate.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2025
    Review
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  12. Cyanide replaces substrate in obligate-ordered addition of nitric oxide to the non-heme mononuclear iron AvMDO active site.Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry · 2023
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Rebeca L FernandezDepartment of Chemistry, University of Wisconsin─Madison, Madison, Wisconsin 53706, United States.
Laura D ElmendorfDepartment of Chemistry, University of Wisconsin─Madison, Madison, Wisconsin 53706, United States.
Robert W SmithDepartment of Biochemistry, University of Wisconsin─Madison, Madison, Wisconsin 53706, United States.
Craig A BingmanDepartment of Biochemistry, University of Wisconsin─Madison, Madison, Wisconsin 53706, United States.
Brian G FoxDepartment of Biochemistry, University of Wisconsin─Madison, Madison, Wisconsin 53706, United States.
Thomas C BrunoldDepartment of Chemistry, University of Wisconsin─Madison, Madison, Wisconsin 53706, United States.ORCID 0000-0001-6516-598X
University of Wisconsin–Madison · US

Funding

User Training & OutreachP30GM138396 · NIGMS · UCHICAGO ARGONNE, LLC · PI ROBERT F. FISCHETTI, JANET L. SMITH · 2020 to 2026
$34.3M
Chemistry-Biology Interface Training ProgramT32GM008505 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI BLACKWELL, HELEN E. · 1993 to 2023
$9.8M
High-Speed High-Sensitivity Detector for X-ray Micro-Crystallography at GM/CA@APSS10OD012289 · OD · UNIVERSITY OF CHICAGO · PI FISCHETTI, ROBERT F. · 2014 to 2014
$2.0M
Structure/Function Relationships in Cysteine and Cysteamine DioxygenasesR01GM117120 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI BRUNOLD, THOMAS CHRISTIAN · 2016 to 2019
$1.2M
NIGMS NIH HHS P30 GM138396NIGMS NIH HHS R01 GM117120NIGMS NIH HHS T32 GM008505NIH HHS S10 OD012289
6 · The paper itself

Abstract

We report the crystal structure of the mammalian non-heme iron enzyme cysteamine dioxygenase (ADO) at 1.9 Å resolution, which shows an Fe and three-histidine (3-His) active site situated at the end of a wide substrate access channel. The open approach to the active site is consistent with the recent discovery that ADO catalyzes not only the conversion of cysteamine to hypotaurine but also the oxidation of N-terminal cysteine (Nt-Cys) peptides to their corresponding sulfinic acids as part of the eukaryotic N-degron pathway. Whole-protein models of ADO in complex with either cysteamine or an Nt-Cys peptide, generated using molecular dynamics and quantum mechanics/molecular mechanics calculations, suggest occlusion of access to the active site by peptide substrate binding. This finding highlights the importance of a small tunnel that leads from the opposite face of the enzyme into the active site, providing a path through which co-substrate O

Indexed as

Protein ConformationAnimalsCatalysisCatalytic DomainCrystallography, X-RayCysteineDioxygenasesHumansIronMiceMolecular Dynamics SimulationPeptidesQuantum TheorySubstrate SpecificityTyrosinecysteamine dioxygenaseCysteineDioxygenasesIronPeptidesTyrosine

Identifiers

PMID34762398
PMCPMC8679139
OpenAlexW3212271128

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.