Evidence map›Paper›PMID 34762273›Full record

ArticleJournal of assisted reproduction and genetics2021

Novel variations in spermatogenic transcription regulators RFX2 and TAF7 increase risk of azoospermia.

Samudra Pal, Pranab Paladhi, Saurav Dutta, Gunja Bose, Papiya Ghosh, Ratna Chattopadhyay, Baidyanath Chakravarty, Indranil Saha, Sujay Ghosh

Open access · greenAbstract read
In one paragraph

Article in Journal of assisted reproduction and genetics, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.9field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 6 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Samudra PalCytogenetics & Genomics Research Unit, Department of Zoology, University of Calcutta, Taraknath-Palit-Siksha-Prangan, Ballygunge Science College Campus, 35 Ballygunge Circular Road, Kolkata, West Bengal, 700019, India.ORCID http://orcid.org/0000-0003-0069-7170
Pranab PaladhiCytogenetics & Genomics Research Unit, Department of Zoology, University of Calcutta, Taraknath-Palit-Siksha-Prangan, Ballygunge Science College Campus, 35 Ballygunge Circular Road, Kolkata, West Bengal, 700019, India.
Saurav DuttaCytogenetics & Genomics Research Unit, Department of Zoology, University of Calcutta, Taraknath-Palit-Siksha-Prangan, Ballygunge Science College Campus, 35 Ballygunge Circular Road, Kolkata, West Bengal, 700019, India.ORCID http://orcid.org/0000-0002-3475-5175
Gunja BoseInstitute of Reproductive Medicine (IRM), HB-36/A/3 1st Cross Rd Bidhannagar, Sector III, Bidhannagar, Kolkata, West Bengal, 700106, India.
Papiya GhoshDepartment of Zoology, Bijoy Krishna Girls' College (Affiliated to University of Calcutta), Howrah, West Bengal, India.
Ratna ChattopadhyayInstitute of Reproductive Medicine (IRM), HB-36/A/3 1st Cross Rd Bidhannagar, Sector III, Bidhannagar, Kolkata, West Bengal, 700106, India.
Baidyanath ChakravartyInstitute of Reproductive Medicine (IRM), HB-36/A/3 1st Cross Rd Bidhannagar, Sector III, Bidhannagar, Kolkata, West Bengal, 700106, India.
Indranil SahaGenome-The Fertility Centre, 61-E, Sarat Bose Road, Kolkata, West Bengal, 700025, India.
Sujay GhoshCytogenetics & Genomics Research Unit, Department of Zoology, University of Calcutta, Taraknath-Palit-Siksha-Prangan, Ballygunge Science College Campus, 35 Ballygunge Circular Road, Kolkata, West Bengal, 700019, India. sgzoo@caluniv.ac.in.ORCID http://orcid.org/0000-0003-1703-8446
University of Calcutta · INInstitute of Reproductive Medicine · IN

Funding

Council of Scientific and Industrial Research, India 17/12/2017(ii) EU-VIndian Council of Medical Research 5/10/FR/10/2015-RCH
6 · The paper itself

Abstract

purposeGenetic etiology of idiopathic male infertility is enigmatic owing to involvement of multiple gene regulatory networks in spermatogenesis process. Any change in optimal function of the transcription factors involved in this process owing to polymorphisms/mutations may increase the risk of infertility. We investigated polymorphisms/mutations of spermatogenic transcription regulators TAF7 and RFX2 and analysed their association with incidence of azoospermia among the men from West Bengal, India.

methodsGenotyping was carried by Sanger's dideoxy sequencing of 130 azoospermic men who were detected negative in Y chromosome microdeletion screening and 140 healthy controls. Association study was done by suitable statistical methods. In silico analysis was performed to infer the intuitive damaging effects of detected variants at transcripts and protein level.

resultsWe found significant association of TAF7 C16T (MW827584 G > A), RFX2 562delT (MZ560629delA), rs11547633 A > C, rs17606721 A > G, MW827583 C > T, and MZ379836 C > T variants with the incidence of azoospermia. In silico analysis predicted that the variants either alter the natural splice junctions of the transcript or cause probable damage in the structure of proteins of respective genes.

conclusionPolymorphisms/mutations of TAF7 and RFX2 genes increase risk of male infertility in Bengali population. The novel variants may be used as markers for male infertility screening in ART practise.

Indexed as

AzoospermiaChromosomes, Human, YHumansIndiaInfertility, MaleMalePolymorphism, GeneticRegulatory Factor X Transcription FactorsSpermatogenesisTATA-Binding Protein Associated FactorsTranscription Factor TFIIDRegulatory Factor X Transcription FactorsRFX2 protein, humanTAF7 protein, humanTATA-Binding Protein Associated FactorsTranscription Factor TFIIDMale infertilityPolymorphismsRFX2SpermatogenesisTAF7

Identifiers

PMID34762273
PMCPMC8666464
OpenAlexW3212356105

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.