Evidence map›Paper›PMID 34762191›Full record

ArticleApplied microscopy2021

Role of Cel5H protein surface amino acids in binding with clay minerals and measurements of its forces.

Renukaradhya K Math, Nagakumar Bharatham, Palaksha K Javaregowda, Han Dae Yun

Open access · diamondAbstract read
In one paragraph

Article in Applied microscopy, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.2field-weighted citation impact, top 54% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 4 citations in OpenAlex.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 2 countries.

Renukaradhya K MathSDM Research Institute for Biomedical Sciences, 5th Floor, Manjushree Building, SDM College of Medical Sciences & Hospital Campus, Shri Dharmasthala Manjunatheshwara University, Dharwad, Sattur, 580009, India. aradhya.swamy@gmail.com.ORCID http://orcid.org/0000-0002-6012-7375
Nagakumar BharathamThe University of Trans-Disciplinary Health Sciences and Technology (TDU), Bengaluru, Karnataka, 560064, India.
Palaksha K JavaregowdaSDM Research Institute for Biomedical Sciences, 5th Floor, Manjushree Building, SDM College of Medical Sciences & Hospital Campus, Shri Dharmasthala Manjunatheshwara University, Dharwad, Sattur, 580009, India.
Han Dae YunDivision of Applied Life Sciences, Gyeongsang National University, Chinju, 660701, Republic of Korea.
Gyeongsang National University · KRSri Dharmasthala Manjunatheshwara College of Dental Sciences & Hospital · INUniversity of Trans-Disciplinary Health Sciences and Technology · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Our previous study on the binding activity between Cel5H and clay minerals showed highest binding efficiency among other cellulase enzymes cloned. Here, based on previous studies, we hypothesized that the positive amino acids on the surface of Cel5H protein may play an important role in binding to clay surfaces. To examine this, protein sequences of Bacillus licheniformis Cel5H (BlCel5H) and Paenibacillus polymyxa Cel5A (PpCel5A) were analyzed and then selected amino acids were mutated. These mutated proteins were investigated for binding activity and force measurement via atomic force microscopy (AFM). A total of seven amino acids which are only present in BlCel5H but not in PpCel5A were selected for mutational studies and the positive residues which are present in both were omitted. Of the seven selected surface lysine residues, only three mutants K196A(M2), K54A(M3) and K157T(M4) showed 12%, 7% and 8% less clay mineral binding ability, respectively compared with wild-type. The probable reason why other mutants did not show altered binding efficiency might be due to relative location of amino acids on the protein surface. Meanwhile, measurement of adhesion forces on mica sheets showed a well-defined maximum at 69 ± 19 pN for wild-type, 58 ± 19 pN for M2, 53 ± 19 pN for M3, and 49 ± 19 pN for M4 proteins. Hence, our results demonstrated that relative location of surface amino acids of Cel5H protein especially positive charged amino acids are important in the process of clay mineral-protein binding interaction through electrostatic exchange of charges.

Indexed as

Adhesion forceAFMClay mineralHomology modelingMutationProtein binding

Identifiers

PMID34762191
PMCPMC8586110
OpenAlexW3211555733

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.