Evidence map›Paper›PMID 34761267›Full record

ArticleNucleic acids research2022

The IntAct database: efficient access to fine-grained molecular interaction data.

Noemi Del Toro, Anjali Shrivastava, Eliot Ragueneau, Birgit Meldal, Colin Combe, Elisabet Barrera, Livia Perfetto, Karyn How, Prashansa Ratan, Gautam Shirodkar and 19 more

Abstract read
In one paragraph

Article in Nucleic acids research, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 230 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
230citing papers in PubMed, 2 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

230 citing papers in PubMed, 2 syntheses or guidelines pooled it.

  1. Pooled it
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  15. Mass spectrometry proteomics for studying mitostasis.Protein science : a publication of the Protein Society · 2026
    Review
  16. Target identification and assessment in the era of AI.Nature reviews. Drug discovery · 2026
    Review
  17. Article
  18. Article
  19. Article
  20. Article

170 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

29 authors.

Noemi Del ToroEuropean Bioinformatics Institute (EMBL-EBI), European Molecular Biology Laboratory, Hinxton, Cambridgeshire CB10 1SD, UK.
Anjali ShrivastavaEuropean Bioinformatics Institute (EMBL-EBI), European Molecular Biology Laboratory, Hinxton, Cambridgeshire CB10 1SD, UK.
Eliot RagueneauEuropean Bioinformatics Institute (EMBL-EBI), European Molecular Biology Laboratory, Hinxton, Cambridgeshire CB10 1SD, UK.ORCID 0000-0002-7876-6503
Birgit MeldalEuropean Bioinformatics Institute (EMBL-EBI), European Molecular Biology Laboratory, Hinxton, Cambridgeshire CB10 1SD, UK.ORCID 0000-0003-4062-6158
Colin CombeWellcome Centre for Cell Biology, University of Edinburgh, Edinburgh EH9 3BF, UK.
Elisabet BarreraEuropean Bioinformatics Institute (EMBL-EBI), European Molecular Biology Laboratory, Hinxton, Cambridgeshire CB10 1SD, UK.ORCID 0000-0002-7245-9692
Livia PerfettoEuropean Bioinformatics Institute (EMBL-EBI), European Molecular Biology Laboratory, Hinxton, Cambridgeshire CB10 1SD, UK.
Karyn HowUCLA-DOE Institute for Genomics and Proteomics, University of California, Los Angeles, CA 90095, USA.
Prashansa RatanUCLA-DOE Institute for Genomics and Proteomics, University of California, Los Angeles, CA 90095, USA.
Gautam ShirodkarUCLA-DOE Institute for Genomics and Proteomics, University of California, Los Angeles, CA 90095, USA.
Odilia LuUCLA-DOE Institute for Genomics and Proteomics, University of California, Los Angeles, CA 90095, USA.
Bálint MészárosGibson Group, European Molecular Biology Laboratory, Heidelberg 69117, Germany.ORCID 0000-0003-0919-4449
Xavier WatkinsEuropean Bioinformatics Institute (EMBL-EBI), European Molecular Biology Laboratory, Hinxton, Cambridgeshire CB10 1SD, UK.
Sangya PundirEuropean Bioinformatics Institute (EMBL-EBI), European Molecular Biology Laboratory, Hinxton, Cambridgeshire CB10 1SD, UK.ORCID 0000-0003-4526-6833
Luana LicataBioinformatics and Computational Biology Unit, Dept. of Molecular Biology, University of Rome Tor Vergata, Rome, Italy.ORCID 0000-0001-5084-9000
Marta IannuccelliBioinformatics and Computational Biology Unit, Dept. of Molecular Biology, University of Rome Tor Vergata, Rome, Italy.
Matteo PellegriniDepartment of Molecular, Cell and Developmental Biology, University of California, Los Angeles, CA 90095, USA.ORCID 0000-0001-9355-9564
Maria Jesus MartinEuropean Bioinformatics Institute (EMBL-EBI), European Molecular Biology Laboratory, Hinxton, Cambridgeshire CB10 1SD, UK.
Simona PanniDipartimento di Biologia, Ecologia e Scienze della Terra, Università della Calabria, Rende, Italy.
Margaret DuesburyEuropean Bioinformatics Institute (EMBL-EBI), European Molecular Biology Laboratory, Hinxton, Cambridgeshire CB10 1SD, UK.
Sylvain D ValletICBMS UMR CNRS 5246, University Lyon 1, Lyon, Villeurbanne 69622, France.ORCID 0000-0001-9885-7499
Juri RappsilberWellcome Centre for Cell Biology, University of Edinburgh, Edinburgh EH9 3BF, UK.
Sylvie Ricard-BlumICBMS UMR CNRS 5246, University Lyon 1, Lyon, Villeurbanne 69622, France.ORCID 0000-0001-9263-1851
Gianni CesareniBioinformatics and Computational Biology Unit, Dept. of Molecular Biology, University of Rome Tor Vergata, Rome, Italy.
Lukasz SalwinskiUCLA-DOE Institute for Genomics and Proteomics, University of California, Los Angeles, CA 90095, USA.
Sandra OrchardEuropean Bioinformatics Institute (EMBL-EBI), European Molecular Biology Laboratory, Hinxton, Cambridgeshire CB10 1SD, UK.ORCID 0000-0002-8878-3972
Pablo PorrasEuropean Bioinformatics Institute (EMBL-EBI), European Molecular Biology Laboratory, Hinxton, Cambridgeshire CB10 1SD, UK.ORCID 0000-0002-8429-8793
Kalpana PanneerselvamEuropean Bioinformatics Institute (EMBL-EBI), European Molecular Biology Laboratory, Hinxton, Cambridgeshire CB10 1SD, UK.
Henning HermjakobEuropean Bioinformatics Institute (EMBL-EBI), European Molecular Biology Laboratory, Hinxton, Cambridgeshire CB10 1SD, UK.ORCID 0000-0001-8479-0262

Funding

ENHANCING THE INTERNATIONAL MOLECULAR EXCHANGE (IMEX): PROVIDING AN IMPROVED COMMUNITY-ORIENTED MOLECULAR INTERACTIONS RESOURCER01GM123126 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI PELLEGRINI, MATTEO · 2018 to 2021
$2.0M
NIGMS NIH HHS R01 GM123126Wellcome Trust 203149Wellcome Trust 218294Wellcome Trust 3367
6 · The paper itself

Abstract

The IntAct molecular interaction database (https://www.ebi.ac.uk/intact) is a curated resource of molecular interactions, derived from the scientific literature and from direct data depositions. As of August 2021, IntAct provides more than one million binary interactions, curated by twelve global partners of the International Molecular Exchange consortium, for which the IntAct database provides a shared curation and dissemination platform. The IMEx curation policy has always emphasised a fine-grained data and curation model, aiming to capture the relevant experimental detail essential for the interpretation of the provided molecular interaction data. Here, we present recent curation focus and progress, as well as a completely redeveloped website which presents IntAct data in a much more user-friendly and detailed way.

Indexed as

Databases, ProteinSoftwareHumansProtein Interaction MappingProtein Interaction Maps

Identifiers

PMID34761267
PMCPMC8728211

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.