Evidence map›Paper›PMID 34759957›Full record

ReviewFrontiers in genetics2021

Integrating CRISPR-Cas and Next Generation Sequencing in Plant Virology.

Muntazir Mushtaq, Aejaz Ahmad Dar, Umer Basu, Basharat Ahmad Bhat, Rakeeb Ahmad Mir, Sanskriti Vats, M S Dar, Anshika Tyagi, Sajad Ali, Monika Bansal and 2 more

Abstract readReview
In one paragraph

Review in Frontiers in genetics, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

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  9. Biotechnological Advances to Improve Abiotic Stress Tolerance in Crops.International journal of molecular sciences · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Muntazir MushtaqDivision of Germplasm Evaluation, ICAR-National Bureau of Plant Genetic Resources, New Delhi, India.
Aejaz Ahmad DarSchool of Biotechnology, Sher-e-Kashmir University of Agricultural Sciences and Technology of Jammu, Jammu, India.
Umer BasuDivision of Plant Pathology, Sher-e-Kashmir University of Agricultural Sciences and Technology of Jammu, Jammu, India.
Basharat Ahmad BhatDepartment of Bioresources, University of Kashmir, Srinagar, India.
Rakeeb Ahmad MirDepartment of Biotechnology, School of Biosciences and Biotechnology, BGSB University, Rajouri, India.
Sanskriti VatsDepartment of Agricultural Biotechnology, National Agri-Food Biotechnology Institute (NABI), Mohali, India.
M S DarDivision of Plant Pathology, Sher-e-Kashmir University of Agricultural Sciences and Technology of Kashmir, Srinagar, India.
Anshika TyagiDepartment of Biotechnology, Yeungnam University, Gyeongsan, South Korea.
Sajad AliDepartment of Biotechnology, Yeungnam University, Gyeongsan, South Korea.
Monika BansalSchool of Agricultural Biotechnology, Punjab Agricultural University, Ludhiana, India.
Gyanendra Kumar RaiSchool of Biotechnology, Sher-e-Kashmir University of Agricultural Sciences and Technology of Jammu, Jammu, India.
Shabir Hussain WaniMountain Research Centre for Field Crops, Sher-e-Kashmir University of Agricultural Sciences and Technology of Kashmir, Srinagar, India.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Plant pathology has been revolutionized by the emergence and intervention of next-generation sequencing technologies (NGS) which provide a fast, cost-effective, and reliable diagnostic for any class of pathogens. NGS has made tremendous advancements in the area of research and diagnostics of plant infecting viromes and has bridged plant virology with other advanced research fields like genome editing technologies. NGS in a broader perspective holds the potential for plant health improvement by diagnosing and mitigating the new or unusual symptoms caused by novel/unidentified viruses. CRISPR-based genome editing technologies can enable rapid engineering of efficient viral/viroid resistance by directly targeting specific nucleotide sites of plant viruses and viroids. Critical genes such as eIf (iso) 4E or eIF4E have been targeted via the CRISPR platform to produce plants resistant to single-stranded RNA (ssRNA) viruses. CRISPR/Cas-based multi-target DNA or RNA tests can be used for rapid and accurate diagnostic assays for plant viruses and viroids. Integrating NGS with CRISPR-based genome editing technologies may lead to a paradigm shift in combating deadly disease-causing plant viruses/viroids at the genomic level. Furthermore, the newly discovered CRISPR/Cas13 system has unprecedented potential in plant viroid diagnostics and interference. In this review, we have highlighted the application and importance of sequencing technologies on covering the viral genomes for precise modulations. This review also provides a snapshot vision of emerging developments in NGS technologies for the characterization of plant viruses and their potential utilities, advantages, and limitations in plant viral diagnostics. Furthermore, some of the notable advances like novel virus-inducible CRISPR/Cas9 system that confers virus resistance with no off-target effects have been discussed.

Indexed as

CRISPRgenome editingNGSviroidvirus

Identifiers

PMID34759957
PMCPMC8572880

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.